SMTL ID : 2xcd.1 (1 other biounit)

Structure of YncF,the genomic dUTPase from Bacillus subtilis

Coordinates

PDB Format

Method

X-RAY DIFFRACTION 1.84 Å

Oligo State

homo-trimer

Ligands

3 x NA: SODIUM ION(Non-functional Binders)

NA.1: 2 residues within 4Å: Chain A: T.15, G.107 3 PLIP interactions: 3 interactions with chain A Hydrogen bonds: A:T.15, A:T.15 Water bridges: A:T.15 NA.4: 2 residues within 4Å: Chain B: T.15, G.107 2 PLIP interactions: 2 interactions with chain B Hydrogen bonds: B:T.15 Water bridges: B:T.15 NA.6: 3 residues within 4Å: Chain C: R.63, S.64, S.65 3 PLIP interactions: 3 interactions with chain C Hydrogen bonds: C:S.64, C:S.65, C:S.65

2 x CL: CHLORIDE ION(Non-functional Binders)

CL.2: 0 residues within 4Å: (No contacts) Ligand excluded by PLIP CL.5: 4 residues within 4Å: Chain C: K.19, I.26, D.27, R.109 Ligand excluded by PLIP

1 x MG: MAGNESIUM ION(Non-covalent)

MG.3: 2 residues within 4Å: Chain B: D.39 Chain C: D.39 No protein-ligand interaction detected (PLIP)

Links

RCSB   PDBe   PDBe-KB   PDBj   PDBsum   CATH   PLIP

Citation

Garcia-Nafria, J. et al., The Structure of the Genomic Bacillus Subtilis Dutpase: Novel Features in the Phe-Lid. Acta Crystallogr.,Sect.D (2010)

Release Date

2010-08-11

Peptides

PROBABLE DEOXYURIDINE 5'-TRIPHOSPHATE NUCLEOTIDOHYDROLASE YNCF: ABC

SMTL:PDB

SMTL Chain Id:
PDB Chain Id:

A
D

B
E

C
F

PROBABLE DEOXYURIDINE 5'-TRIPHOSPHATE NUCLEOTIDOHYDROLASE YNCF

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