SMTL ID : 2xe0.1 (1 other biounit)

Molecular basis of engineered meganuclease targeting of the endogenous human RAG1 locus

Coordinates

PDB Format

Method

X-RAY DIFFRACTION 2.31 Å

Oligo State

hetero-1-1-mer

Ligands

4 x ACT: ACETATE ION(Non-functional Binders)

ACT.1: 6 residues within 4Å: Chain A: A.133, L.134, N.135, D.136, S.137 Chain B: Q.49 3 PLIP interactions: 1 interactions with chain A, 2 interactions with chain B Hydrogen bonds: A:A.132, B:Q.49 Salt bridges: B:K.47 ACT.2: 6 residues within 4Å: Chain A: L.96, K.97, D.136 Chain B: R.50 Chain C: C.15, T.16 6 PLIP interactions: 5 interactions with chain A, 1 interactions with chain B Hydrophobic interactions: A:L.96 Water bridges: A:D.17, A:G.18, A:D.136 Salt bridges: A:K.97, B:R.50 ACT.3: 5 residues within 4Å: Chain A: K.95 Chain B: F.53, K.56, L.57, E.60 4 PLIP interactions: 1 interactions with chain A, 3 interactions with chain B Salt bridges: A:K.95 Hydrophobic interactions: B:F.53, B:K.56, B:L.57 ACT.5: 6 residues within 4Å: Chain A: K.47, Q.49 Chain B: A.133, L.134, N.135, D.136 2 PLIP interactions: 1 interactions with chain B, 1 interactions with chain A Hydrogen bonds: B:N.135, A:Q.49

1 x PGO: S-1,2-PROPANEDIOL(Non-covalent)

PGO.4: 7 residues within 4Å: Chain A: R.50 Chain B: L.96, K.97, N.135, D.136 Chain D: C.15, T.16 4 PLIP interactions: 4 interactions with chain B Hydrogen bonds: B:L.96, B:K.97, B:L.134, B:D.136

3 x MG: MAGNESIUM ION(Non-covalent)

MG.6: 5 residues within 4Å: Chain A: G.18 Chain B: D.19 Chain C: C.15 Chain D: C.14 Ligands: MG.7 4 PLIP interactions: 2 interactions with chain B, 1 interactions with chain A, 1 Ligand-Water interactions Metal complexes: B:D.19, B:D.19, A:G.18, H2O.1 MG.7: 10 residues within 4Å: Chain A: G.18, D.19 Chain B: G.18, D.19 Chain C: C.14, C.15 Chain D: C.14, C.15 Ligands: MG.6, MG.8 2 PLIP interactions: 1 interactions with chain B, 1 interactions with chain A Metal complexes: B:D.19, A:D.19 MG.8: 5 residues within 4Å: Chain A: D.19 Chain B: G.18 Chain C: C.14 Chain D: C.15 Ligands: MG.7 4 PLIP interactions: 1 interactions with chain B, 2 interactions with chain A, 1 Ligand-Water interactions Metal complexes: B:G.18, A:D.19, A:D.19, H2O.1

Links

RCSB   PDBe   PDBe-KB   PDBj   PDBsum   CATH   PLIP

Citation

Munoz, I.G. et al., Molecular Basis of Engineered Meganuclease Targeting of the Endogenous Human Rag1 Locus. Nucleic Acids Res. (2011)

Release Date

2010-09-29

Peptides

I-CREI V2V3 VARIANT: A
I-CREI V2V3 VARIANT: B

SMTL:PDB

SMTL Chain Id:
PDB Chain Id:

A
A

B
B

I-CREI V2V3 VARIANT

I-CREI V2V3 VARIANT

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