SMTL ID : 2xib.1 (3 other biounits)

CRYSTAL STRUCTURE OF AN ALPHA-L-FUCOSIDASE GH29 FROM BACTEROIDES THETAIOTAOMICRON IN COMPLEX WITH DEOXYFUCONOJIRIMYCIN

Coordinates

PDB Format

Method

X-RAY DIFFRACTION 2.20 Å

Oligo State

monomer

Ligands

1 x DFU: (2S,3R,4S,5R)-2-METHYLPIPERIDINE-3,4,5-TRIOL(Non-covalent)

DFU.1: 12 residues within 4Å: Chain A: H.35, E.56, W.57, H.104, H.105, Y.147, W.196, D.198, W.201, R.231, E.257, W.285 8 PLIP interactions: 8 interactions with chain A Hydrophobic interactions: A:W.196, A:W.285 Hydrogen bonds: A:W.57, A:H.104, A:Y.147, A:D.198, A:D.198, A:R.231

1 x SO4: SULFATE ION(Non-functional Binders)

SO4.2: 4 residues within 4Å: Chain A: W.201, R.231, R.240, H.241 3 PLIP interactions: 3 interactions with chain A Salt bridges: A:R.231, A:R.240, A:H.241

2 x GOL: GLYCEROL(Non-functional Binders)

GOL.3: 3 residues within 4Å: Chain A: P.382, Y.383, S.384 3 PLIP interactions: 3 interactions with chain A Hydrogen bonds: A:Y.383, A:S.384 Water bridges: A:R.386 GOL.4: 5 residues within 4Å: Chain A: N.138, G.141, D.143, T.191, K.193 4 PLIP interactions: 4 interactions with chain A Hydrogen bonds: A:G.141, A:D.143, A:K.193 Water bridges: A:V.144

Links

RCSB   PDBe   PDBe-KB   PDBj   PDBsum   CATH   PLIP

Citation

Lammerts Van Bueren, A. et al., Structural and Thermodynamic Analyses of Alpha-L-Fucosidase Inhibitors. Chembiochem (2010)

Release Date

2010-07-21

Peptides

ALPHA-L-FUCOSIDASE: A

SMTL:PDB

SMTL Chain Id:
PDB Chain Id:

A
B

ALPHA-L-FUCOSIDASE

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