SMTL ID : 2xvh.2 (1 other biounit)

CRYSTAL STRUCTURE OF BACTERIAL FLAVIN CONTAINING MONOOXYGENASE IN COMPLEX WITH NADP

Coordinates

PDB Format

Method

X-RAY DIFFRACTION 2.54 Å

Oligo State

homo-dimer

Ligands

2 x FAD: FLAVIN-ADENINE DINUCLEOTIDE(Non-covalent)

FAD.1: 29 residues within 4Å: Chain A: G.9, G.11, P.12, S.13, F.37, E.38, K.39, Q.40, G.45, Q.46, W.47, H.63, S.65, M.66, L.70, S.72, N.73, T.124, A.125, V.126, C.161, T.162, G.163, F.165, Q.318, S.321, F.322, F.325 Ligands: NAP.3 20 PLIP interactions: 20 interactions with chain A Hydrophobic interactions: A:F.165 Hydrogen bonds: A:S.13, A:S.13, A:K.39, A:Q.40, A:Q.46, A:Q.46, A:W.47, A:N.73, A:V.126, A:V.126, A:S.321 Water bridges: A:G.11, A:G.11, A:S.13, A:F.165, A:Q.318 Salt bridges: A:H.63 pi-Stacking: A:W.47 pi-Cation interactions: A:K.39 FAD.4: 29 residues within 4Å: Chain B: G.9, G.11, P.12, S.13, F.37, E.38, K.39, Q.40, G.45, Q.46, W.47, H.63, S.65, M.66, L.70, S.72, N.73, T.124, A.125, V.126, C.161, T.162, G.163, F.165, Q.318, S.321, F.322, F.325 Ligands: NAP.6 20 PLIP interactions: 20 interactions with chain B Hydrophobic interactions: B:F.165 Hydrogen bonds: B:S.13, B:S.13, B:K.39, B:Q.40, B:Q.46, B:Q.46, B:W.47, B:N.73, B:V.126, B:V.126, B:S.321 Water bridges: B:G.11, B:G.11, B:S.13, B:F.165, B:Q.318 Salt bridges: B:H.63 pi-Stacking: B:W.47 pi-Cation interactions: B:K.39

2 x MES: 2-(N-MORPHOLINO)-ETHANESULFONIC ACID(Non-covalent)

MES.2: 3 residues within 4Å: Chain A: R.121, Y.151, E.153 5 PLIP interactions: 5 interactions with chain A Hydrogen bonds: A:E.153, A:E.153 Water bridges: A:D.144 Salt bridges: A:R.121, A:E.153 MES.5: 3 residues within 4Å: Chain B: R.121, Y.151, E.153 3 PLIP interactions: 3 interactions with chain B Hydrogen bonds: B:E.153 Salt bridges: B:R.121, B:E.153

2 x NAP: NADP NICOTINAMIDE-ADENINE-DINUCLEOTIDE PHOSPHATE(Non-covalent)

NAP.3: 24 residues within 4Å: Chain A: Y.67, L.70, W.71, N.73, F.165, Y.169, P.171, F.173, V.203, G.204, S.205, S.206, Y.207, S.208, D.211, R.229, T.230, N.246, C.271, T.272, G.273, Y.274, R.412 Ligands: FAD.1 20 PLIP interactions: 20 interactions with chain A Hydrophobic interactions: A:D.211 Hydrogen bonds: A:W.71, A:N.73, A:S.205, A:S.206, A:S.208, A:S.208, A:R.229, A:T.230, A:N.246, A:D.317, A:R.412 Water bridges: A:S.206, A:S.208, A:A.209, A:R.229, A:R.229, A:G.273 Salt bridges: A:R.229 pi-Cation interactions: A:R.229 NAP.6: 24 residues within 4Å: Chain B: Y.67, L.70, W.71, N.73, F.165, Y.169, P.171, F.173, V.203, G.204, S.205, S.206, Y.207, S.208, D.211, R.229, T.230, N.246, C.271, T.272, G.273, Y.274, R.412 Ligands: FAD.4 22 PLIP interactions: 22 interactions with chain B Hydrophobic interactions: B:D.211 Hydrogen bonds: B:Y.67, B:W.71, B:N.73, B:S.205, B:S.206, B:S.208, B:S.208, B:R.229, B:T.230, B:T.230, B:N.246, B:D.317, B:R.412 Water bridges: B:S.206, B:S.208, B:A.209, B:R.229, B:R.229, B:G.273 Salt bridges: B:R.229 pi-Cation interactions: B:R.229

Links

RCSB   PDBe   PDBe-KB   PDBj   PDBsum   CATH   PLIP

Citation

Cho, H.J. et al., Structural and Functional Analysis of Bacterial Flavin-Containing Monooxygenase Reveals its Ping-Pong-Type Reaction Mechanism. J.Struct.Biol. (2011)

Release Date

2011-05-04

Peptides

FLAVIN-CONTAINING MONOOXYGENASE: AB

SMTL:PDB

SMTL Chain Id:
PDB Chain Id:

A
C

B
C

FLAVIN-CONTAINING MONOOXYGENASE

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