SMTL ID : 2xxb.1

Penta-mutant of Thermus thermophilus lactate dehydrogenase, complex with AMP

Coordinates

PDB Format

Method

X-RAY DIFFRACTION 2.15 Å

Oligo State

homo-tetramer

Ligands

4 x AMP: ADENOSINE MONOPHOSPHATE(Non-covalent)

AMP.1: 15 residues within 4Å: Chain A: V.6, G.7, S.8, G.9, M.10, V.11, D.32, L.33, L.37, Y.62, A.74, A.75, G.76, V.95, V.99 7 PLIP interactions: 7 interactions with chain A Hydrogen bonds: A:M.10, A:V.11, A:L.33, A:Y.62, A:Y.62, A:G.76 Water bridges: A:G.9 AMP.2: 13 residues within 4Å: Chain B: G.7, S.8, G.9, M.10, V.11, D.32, L.33, L.37, Y.62, A.75, G.76, V.95, V.99 6 PLIP interactions: 6 interactions with chain B Hydrogen bonds: B:G.9, B:M.10, B:V.11, B:L.33, B:G.76 Water bridges: B:Y.62 AMP.3: 15 residues within 4Å: Chain C: V.6, G.7, S.8, G.9, M.10, V.11, D.32, L.33, L.37, Y.62, A.74, A.75, G.76, V.95, V.99 7 PLIP interactions: 7 interactions with chain C Hydrogen bonds: C:M.10, C:V.11, C:L.33, C:Y.62, C:Y.62, C:G.76 Water bridges: C:G.9 AMP.4: 13 residues within 4Å: Chain D: G.7, S.8, G.9, M.10, V.11, D.32, L.33, L.37, Y.62, A.75, G.76, V.95, V.99 7 PLIP interactions: 7 interactions with chain D Hydrogen bonds: D:G.9, D:M.10, D:V.11, D:L.33, D:Y.62, D:G.76 Water bridges: D:Y.62

Links

RCSB   PDBe   PDBe-KB   PDBj   PDBsum   CATH   PLIP

Citation

Diop, F. et al., Lactate Dehydrogenase from T. Thermophilus, Penta-Mutant (Complex with AMP). To be Published

Release Date

2010-11-17

Peptides

L-LACTATE DEHYDROGENASE: ABCD

SMTL:PDB

SMTL Chain Id:
PDB Chain Id:

A
A

B
B

C
A

D
B

L-LACTATE DEHYDROGENASE

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