SMTL ID : 2xyr.1

Crystal structure of the nsp16 nsp10 SARS coronavirus complex

Coordinates

PDB Format

Method

X-RAY DIFFRACTION 2.50 Å

Oligo State

hetero-1-1-mer

Ligands

1 x NA: SODIUM ION(Non-functional Binders)

NA.1: 1 residues within 4Å: Chain A: D.220 1 PLIP interactions: 1 interactions with chain A Hydrogen bonds: A:D.220

5 x CL: CHLORIDE ION(Non-functional Binders)

CL.2: 1 residues within 4Å: Chain A: R.279 Ligand excluded by PLIP CL.3: 4 residues within 4Å: Chain A: R.66, N.122, E.284, N.286 Ligand excluded by PLIP CL.4: 3 residues within 4Å: Chain A: I.219, D.220, T.223 Ligand excluded by PLIP CL.5: 2 residues within 4Å: Chain A: N.55, K.249 Ligand excluded by PLIP CL.10: 2 residues within 4Å: Chain B: K.19, R.104 Ligand excluded by PLIP

1 x SFG: SINEFUNGIN(Non-covalent)

SFG.6: 17 residues within 4Å: Chain A: N.43, Y.47, G.71, A.72, G.73, S.74, P.80, G.81, D.99, L.100, N.101, D.114, C.115, D.130, M.131, Y.132, F.149 10 PLIP interactions: 10 interactions with chain A Hydrogen bonds: A:N.43, A:G.71, A:G.73, A:G.81, A:L.100, A:N.101, A:D.114, A:C.115, A:Y.132 Water bridges: A:F.149

1 x MG: MAGNESIUM ION(Non-covalent)

MG.7: 1 residues within 4Å: Chain A: E.276 No protein-ligand interaction detected (PLIP)

2 x ZN: ZINC ION(Non-covalent)

ZN.8: 4 residues within 4Å: Chain B: C.65, C.68, H.74, C.81 4 PLIP interactions: 4 interactions with chain B Metal complexes: B:C.65, B:C.68, B:H.74, B:C.81 ZN.9: 4 residues within 4Å: Chain B: C.108, C.111, C.119, C.121 4 PLIP interactions: 3 interactions with chain B, 1 Ligand-Water interactions Metal complexes: B:C.108, B:C.111, B:C.119, H2O.6

Links

RCSB   PDBe   PDBe-KB   PDBj   PDBsum   CATH   PLIP

Citation

Decroly, E. et al., Crystal Structure and Functional Analysis of the Sars-Coronavirus RNA CAP 2'-O-Methyltransferase Nsp10/Nsp16 Complex. Plos Pathog. (2011)

Release Date

2011-10-26

Peptides

PUTATIVE 2'-O-METHYL TRANSFERASE: A
NON-STRUCTURAL PROTEIN 10: B

SMTL:PDB

SMTL Chain Id:
PDB Chain Id:

A
A

B
B

PUTATIVE 2'-O-METHYL TRANSFERASE

NON-STRUCTURAL PROTEIN 10

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