SMTL ID : 2y03.3 (2 other biounits)

TURKEY BETA1 ADRENERGIC RECEPTOR WITH STABILISING MUTATIONS AND BOUND AGONIST ISOPRENALINE

Coordinates

PDB Format

Method

X-RAY DIFFRACTION 2.85 Å

Oligo State

homo-dimer

Ligands

2 x Y01: CHOLESTEROL HEMISUCCINATE(Non-covalent)

Y01.1: 14 residues within 4Å: Chain A: E.100, C.103, R.127, V.130, I.131, T.134, I.138, I.184 Chain B: R.175, A.176, I.179, A.180, I.183 Ligands: Y01.7 13 PLIP interactions: 8 interactions with chain B, 5 interactions with chain A Hydrophobic interactions: B:R.175, B:I.179, B:I.179, B:A.180, B:I.183, A:E.100, A:V.130, A:T.134, A:I.138 Hydrogen bonds: B:A.176, A:R.127 Water bridges: B:R.175 Salt bridges: B:R.175 Y01.7: 14 residues within 4Å: Chain A: A.176, I.179, A.180, I.188 Chain B: E.100, C.103, R.127, V.130, I.131, T.134, I.184 Ligands: Y01.1, 2CV.2, 2CV.4 9 PLIP interactions: 4 interactions with chain A, 5 interactions with chain B Hydrophobic interactions: A:I.179, A:I.179, A:A.180, A:I.188, B:E.100, B:V.130, B:T.134, B:I.184 Salt bridges: B:R.127

6 x 2CV: HEGA-10(Non-covalent)

2CV.2: 15 residues within 4Å: Chain A: V.142, P.146, H.150, W.151, R.153, D.154, E.155, N.174, A.176, Y.177, A.180 Chain B: V.130, T.134, A.137 Ligands: Y01.7 11 PLIP interactions: 10 interactions with chain A, 1 interactions with chain B Hydrophobic interactions: A:P.146, A:W.151, A:W.151, A:Y.177, A:Y.177, A:A.180, B:A.137 Hydrogen bonds: A:H.150, A:D.154, A:E.155, A:E.155 2CV.3: 5 residues within 4Å: Chain A: A.197, V.200, L.231, G.235, M.238 1 PLIP interactions: 1 interactions with chain A Hydrophobic interactions: A:A.197 2CV.4: 6 residues within 4Å: Chain A: R.175, F.257 Chain B: R.118, L.122, R.127 Ligands: Y01.7 6 PLIP interactions: 2 interactions with chain A, 4 interactions with chain B Hydrophobic interactions: A:F.257, A:F.257, B:L.122 Hydrogen bonds: B:R.118, B:R.118, B:R.127 2CV.8: 12 residues within 4Å: Chain A: V.130, T.134, I.138, L.141 Chain B: P.146, W.151, R.153, D.154, E.155, A.176, Y.177, A.180 12 PLIP interactions: 10 interactions with chain B, 2 interactions with chain A Hydrophobic interactions: B:P.146, B:W.151, B:A.176, B:Y.177, B:Y.177, B:A.180, A:I.138, A:L.141 Hydrogen bonds: B:H.150, B:R.153, B:E.155 Water bridges: B:R.175 2CV.9: 5 residues within 4Å: Chain B: A.197, V.200, L.231, G.235, M.238 1 PLIP interactions: 1 interactions with chain B Hydrophobic interactions: B:V.200 2CV.10: 6 residues within 4Å: Chain A: L.122, M.123, R.127 Chain B: R.175, V.256, F.257 2 PLIP interactions: 1 interactions with chain A, 1 interactions with chain B Hydrophobic interactions: A:L.122 Hydrogen bonds: B:R.175

2 x 5FW: ISOPRENALINE(Non-covalent)

5FW.5: 12 residues within 4Å: Chain A: W.87, D.91, V.92, V.95, F.171, S.181, S.185, F.248, F.249, N.252, N.271, Y.275 13 PLIP interactions: 13 interactions with chain A Hydrophobic interactions: A:W.87, A:V.92, A:V.95, A:F.171, A:F.248 Hydrogen bonds: A:S.181, A:S.185, A:S.185, A:N.252, A:N.271, A:N.271, A:N.271 pi-Stacking: A:F.249 5FW.11: 12 residues within 4Å: Chain B: W.87, T.88, D.91, V.92, V.95, S.181, S.185, F.248, F.249, N.252, N.271, Y.275 14 PLIP interactions: 14 interactions with chain B Hydrophobic interactions: B:W.87, B:T.88, B:V.92, B:V.92, B:V.95, B:F.248 Hydrogen bonds: B:S.181, B:S.185, B:S.185, B:N.252, B:N.271, B:N.271, B:N.271 pi-Stacking: B:F.249

1 x NA: SODIUM ION(Non-functional Binders)

NA.6: 4 residues within 4Å: Chain A: C.162, Y.163, D.165, C.168 1 PLIP interactions: 1 interactions with chain A Hydrogen bonds: A:C.162

Links

RCSB   PDBe   PDBe-KB   PDBj   PDBsum   CATH   PLIP

Citation

Warne, A. et al., The Structural Basis for Agonist and Partial Agonist Action on a Beta1-Adrenergic Receptor. Nature (2011)

Release Date

2011-01-12

Peptides

BETA-1 ADRENERGIC RECEPTOR: AB

SMTL:PDB

SMTL Chain Id:
PDB Chain Id:

A
A

B
B

Membrane

We predict this structure to be a membrane protein.
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BETA-1 ADRENERGIC RECEPTOR

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