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SMTL ID : 2y1t.2
(1 other biounit)
Bacillus subtilis prophage dUTPase in complex with dUDP
Coordinates
PDB Format
Method
X-RAY DIFFRACTION 1.89 Å
Oligo State
homo-trimer
Ligands
3 x
DUD
:
DEOXYURIDINE-5'-DIPHOSPHATE
(Non-covalent)
DUD.1:
10 residues within 4Å:
Chain A:
Q.72
,
N.74
,
G.77
,
V.78
,
I.79
,
Y.83
,
W.90
,
F.91
,
P.93
Chain C:
S.62
17
PLIP interactions
:
8 interactions with chain A
,
9 interactions with chain C
Hydrophobic interactions:
A:I.79
,
A:Y.83
Hydrogen bonds:
A:Q.72
,
A:N.74
,
A:F.91
,
A:F.91
,
C:S.62
Water bridges:
A:V.78
,
A:Y.83
,
C:D.25
,
C:R.61
,
C:R.61
,
C:S.62
,
C:S.62
,
C:Q.110
,
C:Q.110
,
C:Q.110
DUD.2:
11 residues within 4Å:
Chain B:
R.61
,
S.62
,
S.63
Chain C:
N.74
,
G.77
,
V.78
,
I.79
,
Y.83
,
W.90
,
F.91
,
P.93
11
PLIP interactions
:
3 interactions with chain B
,
8 interactions with chain C
Hydrogen bonds:
B:S.62
,
B:S.63
,
C:Q.72
,
C:N.74
,
C:F.91
,
C:F.91
Salt bridges:
B:R.61
Hydrophobic interactions:
C:I.79
,
C:Y.83
Water bridges:
C:V.78
,
C:V.78
DUD.3:
9 residues within 4Å:
Chain A:
R.61
,
S.62
Chain B:
N.74
,
G.77
,
I.79
,
Y.83
,
W.90
,
F.91
,
P.93
15
PLIP interactions
:
8 interactions with chain A
,
7 interactions with chain B
Hydrogen bonds:
A:R.61
,
A:S.62
,
B:Q.72
,
B:N.74
,
B:F.91
,
B:F.91
Water bridges:
A:D.25
,
A:R.61
,
A:S.62
,
A:S.62
,
A:S.63
,
A:Q.110
,
B:V.78
Hydrophobic interactions:
B:I.79
,
B:Y.83
Links
RCSB
PDBe
PDBe-KB
PDBj
PDBsum
CATH
PLIP
Citation
Garcia-Nafria, J. et al., The Structure of Bacillus Subtilis Sp Beta Prophage Dutpase and its Complexes with Two Nucleotides. Acta Crystallogr.,Sect.D (2011)
Release Date
2011-02-23
Peptides
SPBC2 PROPHAGE-DERIVED DEOXYURIDINE 5'-TRIPHOSPHATE NUCLEOTIDOHYDROLASE YOSS:
A
B
C
SMTL:PDB
SMTL Chain Id:
PDB Chain Id:
A
D
B
E
C
F
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Secondary Structure
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2° Structure
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SPBC2 PROPHAGE-DERIVED DEOXYURIDINE 5'-TRIPHOSPHATE NUCLEOTIDOHYDROLASE YOSS
Related Entries With Identical Sequence
2baz.1
|
2xx6.1
|
2xx6.2
|
2xy3.1
|
2xy3.2
|
2y1t.1
Cartoon
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Tube
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Lines
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