SMTL ID : 2y5p.5 (4 other biounits)

B-repeat of Listeria monocytogenes InlB (internalin B)

Coordinates

PDB Format

Method

X-RAY DIFFRACTION 1.30 Å

Oligo State

homo-tetramer

Ligands

8 x CA: CALCIUM ION(Non-covalent)(Non-functional Binders)

CA.1: 2 residues within 4Å: Chain A: E.45, N.47 3 PLIP interactions: 2 interactions with chain A, 1 Ligand-Water interactions Metal complexes: A:E.45, A:N.47, H2O.2 CA.2: 1 residues within 4Å: Chain A: D.12 No protein-ligand interaction detected (PLIP) CA.3: 2 residues within 4Å: Chain B: K.40, E.51 5 PLIP interactions: 2 interactions with chain B, 3 Ligand-Water interactions Metal complexes: B:K.40, B:E.51, H2O.6, H2O.6, H2O.7 CA.4: 0 residues within 4Å: (No contacts) No protein-ligand interaction detected (PLIP) CA.5: 1 residues within 4Å: Chain C: D.63 5 PLIP interactions: 1 interactions with chain C, 4 Ligand-Water interactions Metal complexes: C:D.63, H2O.12, H2O.12, H2O.12, H2O.12 CA.8: 1 residues within 4Å: Chain C: E.73 4 PLIP interactions: 1 interactions with chain C, 3 Ligand-Water interactions Metal complexes: C:E.73, H2O.13, H2O.13, H2O.13 CA.9: 0 residues within 4Å: (No contacts) No protein-ligand interaction detected (PLIP) CA.11: 1 residues within 4Å: Chain D: D.12 2 PLIP interactions: 1 interactions with chain D, 1 Ligand-Water interactions Metal complexes: D:D.12, H2O.13

3 x CL: CHLORIDE ION(Non-functional Binders)

CL.6: 2 residues within 4Å: Chain C: T.24, R.25 Ligand excluded by PLIP CL.7: 2 residues within 4Å: Chain C: N.62, D.63 Ligand excluded by PLIP CL.10: 2 residues within 4Å: Chain D: K.71, A.72 Ligand excluded by PLIP

Links

RCSB   PDBe   PDBe-KB   PDBj   PDBsum   CATH   PLIP

Citation

Ebbes, M. et al., Fold and Function of the Inlb B-Repeat. J.Biol.Chem. (2011)

Release Date

2011-02-23

Peptides

INTERNALIN B: ABCD

SMTL:PDB

SMTL Chain Id:
PDB Chain Id:

A
A

B
B

C
C

D
D

INTERNALIN B

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