SMTL ID : 2y8n.1 (2 other biounits)

Crystal structure of glycyl radical enzyme

Coordinates

PDB Format

Method

X-RAY DIFFRACTION 1.75 Å

Oligo State

hetero-2-2-mer

Ligands

4 x SF4: IRON/SULFUR CLUSTER(Non-covalent)

SF4.1: 10 residues within 4Å: Chain B: H.3, C.6, N.8, Y.9, C.19, L.21, A.35, C.36, N.38, F.39 4 PLIP interactions: 4 interactions with chain B, Metal complexes: B:H.3, B:C.6, B:C.19, B:C.36 SF4.2: 11 residues within 4Å: Chain A: W.58, R.61 Chain B: C.45, C.48, N.50, F.51, C.62, A.77, C.80, S.82, Y.83 4 PLIP interactions: 4 interactions with chain B, Metal complexes: B:C.45, B:C.48, B:C.62, B:C.80 SF4.3: 8 residues within 4Å: Chain D: H.3, C.6, N.8, C.19, L.21, A.35, C.36, F.39 4 PLIP interactions: 4 interactions with chain D, Metal complexes: D:H.3, D:C.6, D:C.19, D:C.36 SF4.4: 12 residues within 4Å: Chain C: W.58, R.61 Chain D: C.45, C.48, N.50, F.51, C.62, G.64, A.77, C.80, S.82, Y.83 4 PLIP interactions: 4 interactions with chain D, Metal complexes: D:C.45, D:C.48, D:C.62, D:C.80

Links

RCSB   PDBe   PDBe-KB   PDBj   PDBsum   CATH   PLIP

Citation

Martins, B.M. et al., Structural Basis for a Kolbe-Type Decarboxylation Catalyzed by a Glycyl Radical Enzyme. J.Am.Chem.Soc. (2011)

Release Date

2011-09-21

Peptides

4-HYDROXYPHENYLACETATE DECARBOXYLASE LARGE SUBUNIT: AC
4-HYDROXYPHENYLACETATE DECARBOXYLASE SMALL SUBUNIT: BD

SMTL:PDB

SMTL Chain Id:
PDB Chain Id:

A
A

C
C

B
B

D
D

4-HYDROXYPHENYLACETATE DECARBOXYLASE LARGE SUBUNIT

4-HYDROXYPHENYLACETATE DECARBOXYLASE SMALL SUBUNIT

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