SMTL ID : 2yd6.1

Crystal structure of the N-terminal Ig1-2 module of Human Receptor Protein Tyrosine Phosphatase Delta

Coordinates

PDB Format

Method

X-RAY DIFFRACTION 1.35 Å

Oligo State

homo-dimer

Ligands

2 x CL: CHLORIDE ION(Non-functional Binders)

CL.1: 4 residues within 4Å: Chain A: P.13, V.14, F.26, I.27 Ligand excluded by PLIP CL.3: 4 residues within 4Å: Chain B: P.13, V.14, F.26, I.27 Ligand excluded by PLIP

2 x FLC: CITRATE ANION(Non-covalent)

FLC.2: 5 residues within 4Å: Chain A: N.49, Q.50, R.51, R.71, R.74 15 PLIP interactions: 15 interactions with chain A Hydrophobic interactions: A:Q.50 Hydrogen bonds: A:N.49, A:N.49, A:N.49, A:Q.50, A:R.51, A:R.51 Water bridges: A:R.74, A:R.74 Salt bridges: A:R.51, A:R.51, A:R.71, A:R.71, A:R.74, A:R.74 FLC.4: 5 residues within 4Å: Chain B: N.49, Q.50, R.51, R.71, R.74 15 PLIP interactions: 15 interactions with chain B Hydrophobic interactions: B:Q.50 Hydrogen bonds: B:N.49, B:N.49, B:N.49, B:Q.50, B:R.51, B:R.51 Water bridges: B:R.74, B:R.74 Salt bridges: B:R.51, B:R.51, B:R.71, B:R.71, B:R.74, B:R.74

Links

RCSB   PDBe   PDBe-KB   PDBj   PDBsum   CATH   PLIP

Citation

Coles, C.H. et al., Proteoglycan-Specific Molecular Switch for Rptp Sigma Clustering and Neuronal Extension. Science (2011)

Release Date

2011-04-13

Peptides

PTPRD PROTEIN: AB

SMTL:PDB

SMTL Chain Id:
PDB Chain Id:

A
A

B
A

PTPRD PROTEIN

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