- Coordinates
- PDB Format
- Method
- X-RAY DIFFRACTION 2.00 Å
- Oligo State
- homo-dimer
- Ligands
- 4 x MN: MANGANESE (II) ION(Non-functional Binders)(Non-covalent)
- 5 x SO4: SULFATE ION(Non-functional Binders)
SO4.3: 4 residues within 4Å:- Chain A: S.75, A.76, G.77, D.78
3 PLIP interactions:3 interactions with chain A- Hydrogen bonds: A:S.75, A:S.75, A:G.77
SO4.4: 3 residues within 4Å:- Chain A: P.40, R.44
- Chain B: L.65
2 PLIP interactions:1 interactions with chain A, 1 interactions with chain B- Salt bridges: A:R.44
- Water bridges: B:A.69
SO4.5: 2 residues within 4Å:- Chain A: R.124, A.125
No protein-ligand interaction detected (PLIP)SO4.16: 3 residues within 4Å:- Chain B: K.118, K.131, W.135
4 PLIP interactions:4 interactions with chain B- Water bridges: B:K.118, B:K.118
- Salt bridges: B:K.118, B:K.131
SO4.17: 1 residues within 4Å:- Chain B: R.25
3 PLIP interactions:3 interactions with chain B- Water bridges: B:R.25, B:R.25
- Salt bridges: B:R.25
- 14 x GOL: GLYCEROL(Non-functional Binders)
GOL.6: 6 residues within 4Å:- Chain A: E.53, D.88, Y.91, V.92
- Chain B: V.111, N.115
4 PLIP interactions:1 interactions with chain B, 3 interactions with chain A- Hydrogen bonds: B:N.115, A:E.53, A:D.88
- Water bridges: A:E.53
GOL.7: 2 residues within 4Å:- Chain A: P.4, F.5
No protein-ligand interaction detected (PLIP)GOL.8: 8 residues within 4Å:- Chain A: D.51, S.54, A.55, R.58
- Chain B: D.51, S.54, R.58
- Ligands: GOL.20
8 PLIP interactions:5 interactions with chain B, 3 interactions with chain A- Hydrogen bonds: B:D.51, B:R.58, A:D.51, A:R.58, A:R.58
- Water bridges: B:S.54, B:R.58, B:R.58
GOL.9: 4 residues within 4Å:- Chain A: T.31, P.32, E.33, R.34
3 PLIP interactions:3 interactions with chain A- Hydrogen bonds: A:E.33
- Water bridges: A:T.31, A:R.34
GOL.10: 2 residues within 4Å:- Chain A: R.124, K.128
3 PLIP interactions:3 interactions with chain A- Hydrogen bonds: A:R.124, A:R.124, A:K.128
GOL.11: 6 residues within 4Å:- Chain A: R.113, A.114, S.117, G.134, W.135, R.136
5 PLIP interactions:5 interactions with chain A- Hydrogen bonds: A:R.113, A:S.117, A:S.117, A:S.117, A:R.136
GOL.12: 3 residues within 4Å:- Chain A: H.63, A.66, R.67
1 PLIP interactions:1 interactions with chain A- Hydrogen bonds: A:H.63
GOL.13: 3 residues within 4Å:- Chain A: R.141
- Chain B: A.80, P.81
1 PLIP interactions:1 interactions with chain A- Hydrogen bonds: A:R.141
GOL.18: 4 residues within 4Å:- Chain A: Q.148
- Chain B: S.75, A.76, G.77
4 PLIP interactions:3 interactions with chain B, 1 interactions with chain A- Hydrogen bonds: B:A.76, B:G.77, A:Q.148
- Water bridges: B:S.75
GOL.19: 7 residues within 4Å:- Chain A: V.111, N.115
- Chain B: E.53, D.88, Y.91, V.92
- Ligands: MN.14
3 PLIP interactions:1 interactions with chain A, 2 interactions with chain B- Hydrogen bonds: A:N.115, B:E.53, B:D.88
GOL.20: 5 residues within 4Å:- Chain A: R.58
- Chain B: D.51, A.55, R.58
- Ligands: GOL.8
2 PLIP interactions:2 interactions with chain B- Hydrogen bonds: B:D.51
- Water bridges: B:D.51
GOL.21: 5 residues within 4Å:- Chain B: K.118, K.128, Q.129, L.130, K.131
6 PLIP interactions:6 interactions with chain B- Hydrogen bonds: B:K.128, B:Q.129, B:K.131, B:K.131
- Water bridges: B:K.118, B:K.131
GOL.22: 4 residues within 4Å:- Chain B: P.122, R.123, R.124, A.125
1 PLIP interactions:1 interactions with chain B- Water bridges: B:R.123
GOL.23: 2 residues within 4Å:- Chain B: R.124, K.128
3 PLIP interactions:3 interactions with chain B- Hydrogen bonds: B:R.124, B:R.124, B:K.128
- Links
- RCSB PDBe PDBe-KB PDBj PDBsum CATH PLIP
- Citation
- Goncalves, A.M.D. et al., Structural and Functional Insights Into Dr2231 Protein, the Mazg-Like Nucleoside Triphosphate Pyrophosphohydrolase from Deinococcus Radiodurans. J.Biol.Chem. (2011)
- Release Date
- 2011-07-06
- Peptides
- MAZG-LIKE NUCLEOSIDE TRIPHOSPHATE PYROPHOSPHOHYDROLASE: AB
- SMTL:PDB
- SMTL Chain Id:
PDB Chain Id:A
CB
D
- Coordinates
- PDB Format
- Method
- X-RAY DIFFRACTION 2.00 Å
- Oligo State
- homo-dimer
- Ligands
- 4 x MN: MANGANESE (II) ION(Non-functional Binders)(Non-covalent)
- 5 x SO4: SULFATE ION(Non-functional Binders)
- 14 x GOL: GLYCEROL(Non-functional Binders)
- Links
- RCSB PDBe PDBe-KB PDBj PDBsum CATH PLIP
- Citation
- Goncalves, A.M.D. et al., Structural and Functional Insights Into Dr2231 Protein, the Mazg-Like Nucleoside Triphosphate Pyrophosphohydrolase from Deinococcus Radiodurans. J.Biol.Chem. (2011)
- Release Date
- 2011-07-06
- Peptides
- MAZG-LIKE NUCLEOSIDE TRIPHOSPHATE PYROPHOSPHOHYDROLASE: AB
- SMTL:PDB
- SMTL Chain Id:
PDB Chain Id:A
CB
D