SMTL ID : 2yme.2 (1 other biounit)

Crystal structure of a mutant binding protein (5HTBP-AChBP) in complex with granisetron

Coordinates

PDB Format

Method

X-RAY DIFFRACTION 2.40 Å

Oligo State

homo-pentamer

Ligands

5 x NAG: 2-acetamido-2-deoxy-beta-D-glucopyranose(Post Translational Modification)

NAG.1: 2 residues within 4Å: Chain A: G.71, N.72 No protein-ligand interaction detected (PLIP) NAG.4: 2 residues within 4Å: Chain B: G.71, N.72 No protein-ligand interaction detected (PLIP) NAG.6: 1 residues within 4Å: Chain C: N.72 No protein-ligand interaction detected (PLIP) NAG.10: 1 residues within 4Å: Chain D: N.72 No protein-ligand interaction detected (PLIP) NAG.13: 2 residues within 4Å: Chain E: N.68, N.72 1 PLIP interactions: 1 interactions with chain E Hydrogen bonds: E:N.68

5 x CWB: 1-methyl-N-[(1R,5S)-9-methyl-9-azabicyclo[3.3.1]nonan-3-yl]indazole-3-carboxamide

CWB.2: 13 residues within 4Å: Chain A: Y.91, S.144, W.145, Y.186, C.188, C.189, Y.193 Chain B: T.34, W.53, R.55, M.114, I.116, D.162 3 PLIP interactions: 2 interactions with chain A, 1 interactions with chain B Hydrophobic interactions: A:W.145, A:Y.186, B:W.53 CWB.5: 12 residues within 4Å: Chain B: Y.91, S.144, W.145, Y.186, C.188, C.189, Y.193 Chain C: T.34, W.53, R.55, I.116, D.162 4 PLIP interactions: 1 interactions with chain C, 3 interactions with chain B Hydrophobic interactions: C:W.53, B:W.145, B:Y.186, B:Y.193 CWB.7: 12 residues within 4Å: Chain C: Y.91, S.144, W.145, Y.186, C.188, C.189, Y.193 Chain D: T.34, W.53, R.55, I.116, D.162 5 PLIP interactions: 4 interactions with chain C, 1 interactions with chain D Hydrophobic interactions: C:W.145, C:Y.186, C:Y.186, C:Y.193, D:W.53 CWB.9: 13 residues within 4Å: Chain D: Y.91, S.144, W.145, Y.186, C.188, C.189, Y.193 Chain E: T.34, W.53, R.55, M.114, I.116, D.162 5 PLIP interactions: 2 interactions with chain E, 3 interactions with chain D Hydrophobic interactions: E:W.53, E:I.116, D:W.145, D:Y.186, D:Y.193 CWB.11: 11 residues within 4Å: Chain A: T.34, W.53, R.55, I.116, D.162 Chain E: S.144, W.145, Y.186, C.188, C.189, Y.193 7 PLIP interactions: 5 interactions with chain E, 2 interactions with chain A Hydrophobic interactions: E:W.145, E:W.145, E:Y.186, E:Y.186, E:Y.193, A:W.53, A:I.116

3 x PO4: PHOSPHATE ION(Non-functional Binders)

PO4.3: 2 residues within 4Å: Chain A: R.57, K.59 6 PLIP interactions: 6 interactions with chain A Water bridges: A:T.28, A:T.28, A:R.57, A:K.59 Salt bridges: A:R.57, A:K.59 PO4.8: 2 residues within 4Å: Chain C: R.57, K.59 4 PLIP interactions: 4 interactions with chain C Water bridges: C:R.57, C:R.57 Salt bridges: C:R.57, C:K.59 PO4.12: 2 residues within 4Å: Chain E: R.57, K.59 6 PLIP interactions: 6 interactions with chain E Water bridges: E:T.28, E:T.28, E:R.57, E:R.57 Salt bridges: E:R.57, E:K.59

Links

RCSB   PDBe   PDBe-KB   PDBj   PDBsum   CATH   PLIP

Citation

Kesters, D. et al., Structural Basis of Ligand Recognition in 5-Ht3 Receptors. Embo Rep. (2013)

Release Date

2012-12-26

Peptides

SOLUBLE ACETYLCHOLINE RECEPTOR: ABCDE

SMTL:PDB

SMTL Chain Id:
PDB Chain Id:

A
A

B
B

C
C

D
D

E
E

SOLUBLE ACETYLCHOLINE RECEPTOR

Related Entries With Identical Sequence