SMTL ID : 2ynt.2 (1 other biounit)

GIM-1-3Mol native. Crystal structures of Pseudomonas aeruginosa GIM- 1: active site plasticity in metallo-beta-lactamases

Coordinates

PDB Format

Method

X-RAY DIFFRACTION 1.60 Å

Oligo State

homo-dimer

Ligands

4 x ZN: ZINC ION(Non-covalent)

ZN.1: 4 residues within 4Å: Chain A: H.77, H.79, H.139 Ligands: ZN.2 4 PLIP interactions: 3 interactions with chain A, 1 Ligand-Water interactions Metal complexes: A:H.77, A:H.79, A:H.139, H2O.6 ZN.2: 5 residues within 4Å: Chain A: D.81, R.82, C.158, H.200 Ligands: ZN.1 4 PLIP interactions: 3 interactions with chain A, 1 Ligand-Water interactions Metal complexes: A:D.81, A:C.158, A:H.200, H2O.6 ZN.4: 5 residues within 4Å: Chain B: H.77, H.79, D.81, H.139 Ligands: ZN.5 4 PLIP interactions: 3 interactions with chain B, 1 Ligand-Water interactions Metal complexes: B:H.77, B:H.79, B:H.139, H2O.15 ZN.5: 5 residues within 4Å: Chain B: D.81, R.82, C.158, H.200 Ligands: ZN.4 4 PLIP interactions: 3 interactions with chain B, 1 Ligand-Water interactions Metal complexes: B:D.81, B:C.158, B:H.200, H2O.15

2 x GOL: GLYCEROL(Non-functional Binders)

GOL.3: 4 residues within 4Å: Chain A: L.7, E.8, V.9, W.62 2 PLIP interactions: 2 interactions with chain A Hydrogen bonds: A:V.9, A:V.9 GOL.6: 5 residues within 4Å: Chain B: D.121, Y.133, Y.134, P.135, G.136 4 PLIP interactions: 4 interactions with chain B Hydrogen bonds: B:Y.133 Water bridges: B:D.121, B:D.121, B:A.137

Links

RCSB   PDBe   PDBe-KB   PDBj   PDBsum   CATH   PLIP

Citation

Borra, P.S. et al., Crystal Structures of Pseudomonas Aeruginosa Gim-1: Active-Site Plasticity in Metallo-Beta-Lactamases. Antimicrob.Agents Chemother. (2013)

Release Date

2013-07-24

Peptides

GIM-1 PROTEIN: AB

SMTL:PDB

SMTL Chain Id:
PDB Chain Id:

A
A

B
C

GIM-1 PROTEIN

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