SMTL ID : 2yol.1

West Nile Virus NS2B-NS3 protease in complex with 3,4- dichlorophenylacetyl-Lys-Lys-GCMA

Coordinates

PDB Format

Method

X-RAY DIFFRACTION 3.20 Å

Oligo State

monomer

Ligands

1 x CL: CHLORIDE ION(Non-functional Binders)

CL.1: 4 residues within 4Å: Chain A: R.11, D.14, I.15, T.80 Ligand excluded by PLIP

1 x EBN: (S)-6-amino-N-((S)-6-amino-1-(((1r,4S)-4-guanidinocyclohexyl)methylamino)-1-oxohexan-2-yl)-2-(2-(3,4-dichlorophenyl)acetamido)hexanamide(Non-covalent)

EBN.2: 17 residues within 4Å: Chain A: G.38, N.39, F.40, Q.41, D.45, H.111, D.135, D.189, Y.190, T.192, S.195, Y.210, G.211, N.212, G.213, I.215, Y.221 7 PLIP interactions: 7 interactions with chain A Hydrophobic interactions: A:Y.221 Hydrogen bonds: A:D.45, A:D.135, A:T.192, A:S.195, A:G.211 Salt bridges: A:D.189

1 x NI: NICKEL (II) ION(Non-covalent)

NI.3: 2 residues within 4Å: Chain A: H.152, D.153 1 PLIP interactions: 1 interactions with chain A Metal complexes: A:H.152

Links

RCSB   PDBe   PDBe-KB   PDBj   PDBsum   CATH   PLIP

Citation

Hammamy, M.Z. et al., Development and Characterization of New Peptidomimetic Inhibitors of the West Nile Virus Ns2B-Ns3 Protease. Chemmedchem (2013)

Release Date

2013-03-27

Peptides

SERINE PROTEASE SUBUNIT NS2B, SERINE PROTEASE NS3: A

SMTL:PDB

SMTL Chain Id:
PDB Chain Id:

A
A

SERINE PROTEASE SUBUNIT NS2B, SERINE PROTEASE NS3

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