Crystallization of a 45 kDa peroxygenase- peroxidase from the mushroom Agrocybe aegerita and structure determination by SAD utilizing only the haem iron
Coordinates
PDB Format
Method
X-RAY DIFFRACTION
2.31 Å
Oligo State
homo-dimer
Ligands
1 x
NAG-
NAG-
BMA-
MAN-
MAN-
MAN:
alpha-D-mannopyranose-(1-2)-alpha-D-mannopyranose-(1-3)-[alpha-D-mannopyranose-(1-6)]beta-D-mannopyranose-(1-4)-2-acetamido-2-deoxy-beta-D-glucopyranose-(1-4)-2-acetamido-2-deoxy-beta-D-glucopyranose(Non-covalent)
NAG-NAG-BMA-MAN-MAN-MAN.1:
6
residues within 4Å:
Chain A:
F.130,
F.131,
N.138,
L.141,
T.176,
P.178
1 PLIP interactions:
1 interactions with chain A
Hydrogen bonds:
A:T.176
1 x
NAG-
NAG-
BMA-
MAN-
MAN:
alpha-D-mannopyranose-(1-6)-alpha-D-mannopyranose-(1-6)-beta-D-mannopyranose-(1-4)-2-acetamido-2-deoxy-beta-D-glucopyranose-(1-4)-2-acetamido-2-deoxy-beta-D-glucopyranose(Non-covalent)
NAG-NAG-BMA-MAN-MAN.2:
13
residues within 4Å:
Chain A:
F.152,
G.153,
G.154,
N.158,
T.160,
Q.210
Chain B:
C.275,
L.276,
E.279,
A.314,
C.316,
T.317
Ligands:
SO4.23
2 PLIP interactions:
2 interactions with chain B
Hydrogen bonds:
B:E.279,
B:C.275
Water bridges:
B:E.279
5 x
NAG-
NAG:
2-acetamido-2-deoxy-beta-D-glucopyranose-(1-4)-2-acetamido-2-deoxy-beta-D-glucopyranose(Post Translational Modification)