SMTL ID : 2yq2.1

Structure of BVDV1 envelope glycoprotein E2, pH8

Coordinates

PDB Format

Method

X-RAY DIFFRACTION 2.58 Å

Oligo State

homo-dimer

Ligands

6 x NAG: 2-acetamido-2-deoxy-beta-D-glucopyranose(Post Translational Modification)

NAG.1: 6 residues within 4Å: Chain A: E.100, V.129, C.130, G.167, I.169, N.186 2 PLIP interactions: 2 interactions with chain A Hydrogen bonds: A:G.167, A:N.186 NAG.2: 1 residues within 4Å: Chain A: N.117 No protein-ligand interaction detected (PLIP) NAG.3: 4 residues within 4Å: Chain A: S.198, G.199, N.230, E.231 2 PLIP interactions: 2 interactions with chain A Hydrogen bonds: A:E.231, A:E.231 NAG.4: 4 residues within 4Å: Chain B: Q.171, G.199, N.230, E.231 2 PLIP interactions: 2 interactions with chain B Hydrogen bonds: B:Q.171, B:Q.171 NAG.5: 6 residues within 4Å: Chain B: E.100, V.129, C.130, G.167, I.169, N.186 2 PLIP interactions: 2 interactions with chain B Hydrogen bonds: B:G.167, B:N.186 NAG.6: 4 residues within 4Å: Chain B: N.117, T.119, L.120, W.187 1 PLIP interactions: 1 interactions with chain B Water bridges: B:L.121

Links

RCSB   PDBe   PDBe-KB   PDBj   PDBsum   CATH   PLIP

Citation

El Omari, K. et al., Structure of a Pestivirus Envelope Glycoprotein E2 Clarifies its Role in Cell Entry. Cell Rep. (2013)

Release Date

2013-01-16

Peptides

BVDV1 E2: AB

SMTL:PDB

SMTL Chain Id:
PDB Chain Id:

A
A

B
B

BVDV1 E2