SMTL ID : 2yrx.1

Crystal structure of GAR synthetase from Geobacillus kaustophilus

Coordinates

PDB Format

Method

X-RAY DIFFRACTION 1.90 Å

Oligo State

monomer

Ligands

2 x PO4: PHOSPHATE ION(Non-functional Binders)

PO4.1: 4 residues within 4Å: Chain A: Y.361, G.395, G.396, R.397 5 PLIP interactions: 5 interactions with chain A Hydrogen bonds: A:Y.361, A:Y.361, A:G.396, A:R.397 Water bridges: A:R.397 PO4.2: 4 residues within 4Å: Chain A: R.32, R.308, D.311, R.397 8 PLIP interactions: 8 interactions with chain A Water bridges: A:R.32, A:R.32, A:R.308, A:D.311, A:R.397 Salt bridges: A:R.32, A:R.308, A:R.397

1 x AMP: ADENOSINE MONOPHOSPHATE(Non-covalent)

AMP.3: 8 residues within 4Å: Chain A: A.139, E.207, Y.208, L.209, E.213, K.235, N.245, I.303 6 PLIP interactions: 6 interactions with chain A Hydrogen bonds: A:E.207, A:L.209, A:E.213, A:N.245 Water bridges: A:E.213 Salt bridges: A:K.164

Links

RCSB   PDBe   PDBe-KB   PDBj   PDBsum   CATH   PLIP

Citation

Sampei, G. et al., Crystal structures of glycinamide ribonucleotide synthetase, PurD, from thermophilic eubacteria. J.Biochem. (2010)

Release Date

2007-10-09

Peptides

Phosphoribosylglycinamide synthetase: A

SMTL:PDB

SMTL Chain Id:
PDB Chain Id:

A
A

Phosphoribosylglycinamide synthetase

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