SMTL ID : 2yvk.2 (1 other biounit)

Crystal structure of 5-methylthioribose 1-phosphate isomerase product complex from Bacillus subtilis

Coordinates

PDB Format

Method

X-RAY DIFFRACTION 2.40 Å

Oligo State

homo-dimer

Ligands

2 x MRU: 5-S-METHYL-1-O-PHOSPHONO-5-THIO-D-RIBULOSE(Non-covalent)

MRU.1: 17 residues within 4Å: Chain A: R.72, G.73, A.74, P.75, R.115, C.181, N.182, A.183, A.187, T.188, T.193, Q.220, A.260, D.261, N.271, K.272, F.338 10 PLIP interactions: 10 interactions with chain A Hydrogen bonds: A:G.73, A:A.74, A:Q.220, A:D.261, A:N.271, A:K.272, A:K.272 Salt bridges: A:R.72, A:R.115, A:K.272 MRU.2: 14 residues within 4Å: Chain B: R.72, G.73, A.74, P.75, R.115, C.181, A.183, A.187, Q.220, A.260, D.261, N.271, K.272, F.338 9 PLIP interactions: 9 interactions with chain B Hydrogen bonds: B:G.73, B:A.74, B:Q.220, B:D.261, B:N.271, B:K.272 Salt bridges: B:R.72, B:R.115, B:K.272

Links

RCSB   PDBe   PDBe-KB   PDBj   PDBsum   CATH   PLIP

Citation

Tamura, H. et al., Crystal structure of 5-methylthioribose 1-phosphate isomerase product complex from Bacillus subtilis: Implications for catalytic mechanism. Protein Sci. (2008)

Release Date

2008-01-22

Peptides

Methylthioribose-1-phosphate isomerase: AB

SMTL:PDB

SMTL Chain Id:
PDB Chain Id:

A
C

B
D

Methylthioribose-1-phosphate isomerase

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