SMTL ID : 2yyk.1

Crystal structure of the mutant of HpaB (T198I, A276G, and R466H)

Coordinates

PDB Format

Method

X-RAY DIFFRACTION 1.60 Å

Oligo State

homo-tetramer

Ligands

4 x NA: SODIUM ION(Non-functional Binders)

NA.1: 3 residues within 4Å: Chain A: K.22, E.226 Chain C: H.237 2 PLIP interactions: 2 interactions with chain A Hydrogen bonds: A:K.22, A:E.226 NA.6: 3 residues within 4Å: Chain B: K.22, E.226 Chain D: H.237 2 PLIP interactions: 2 interactions with chain B Hydrogen bonds: B:K.22, B:K.22 NA.11: 3 residues within 4Å: Chain A: H.237 Chain C: K.22, E.226 2 PLIP interactions: 2 interactions with chain C Hydrogen bonds: C:K.22, C:K.22 NA.16: 3 residues within 4Å: Chain B: H.237 Chain D: K.22, E.226 2 PLIP interactions: 1 interactions with chain B, 1 interactions with chain D Hydrogen bonds: B:H.237, D:K.22

12 x ACY: ACETIC ACID(Non-functional Binders)

ACY.2: 6 residues within 4Å: Chain A: R.355, G.356, D.359, L.452, V.455, Y.456 2 PLIP interactions: 2 interactions with chain A Hydrophobic interactions: A:Y.456 Salt bridges: A:R.355 ACY.3: 7 residues within 4Å: Chain A: L.144, T.145, N.146, R.181, P.196, S.197, I.198 5 PLIP interactions: 5 interactions with chain A Hydrogen bonds: A:T.145, A:S.197, A:I.198 Water bridges: A:S.197 Salt bridges: A:R.181 ACY.4: 4 residues within 4Å: Chain A: Y.60, L.72, D.79, R.82 6 PLIP interactions: 6 interactions with chain A Hydrophobic interactions: A:Y.60, A:L.72 Water bridges: A:E.61, A:E.61, A:R.82 Salt bridges: A:R.82 ACY.7: 6 residues within 4Å: Chain B: R.355, G.356, D.359, L.452, V.455, Y.456 2 PLIP interactions: 2 interactions with chain B Hydrophobic interactions: B:Y.456 Salt bridges: B:R.355 ACY.8: 7 residues within 4Å: Chain B: L.144, T.145, N.146, R.181, P.196, S.197, I.198 5 PLIP interactions: 5 interactions with chain B Hydrogen bonds: B:T.145, B:S.197, B:I.198 Water bridges: B:S.197 Salt bridges: B:R.181 ACY.9: 4 residues within 4Å: Chain B: Y.60, L.72, D.79, R.82 6 PLIP interactions: 6 interactions with chain B Hydrophobic interactions: B:Y.60, B:L.72 Water bridges: B:E.61, B:E.61, B:R.82 Salt bridges: B:R.82 ACY.12: 6 residues within 4Å: Chain C: R.355, G.356, D.359, L.452, V.455, Y.456 3 PLIP interactions: 3 interactions with chain C Hydrophobic interactions: C:Y.456 Hydrogen bonds: C:D.359 Salt bridges: C:R.355 ACY.13: 7 residues within 4Å: Chain C: L.144, T.145, N.146, R.181, P.196, S.197, I.198 5 PLIP interactions: 5 interactions with chain C Hydrogen bonds: C:T.145, C:S.197, C:I.198 Water bridges: C:S.197 Salt bridges: C:R.181 ACY.14: 4 residues within 4Å: Chain C: Y.60, L.72, D.79, R.82 6 PLIP interactions: 6 interactions with chain C Hydrophobic interactions: C:Y.60, C:L.72 Water bridges: C:E.61, C:E.61, C:R.82 Salt bridges: C:R.82 ACY.17: 6 residues within 4Å: Chain D: R.355, G.356, D.359, L.452, V.455, Y.456 3 PLIP interactions: 3 interactions with chain D Hydrophobic interactions: D:Y.456 Hydrogen bonds: D:D.359 Salt bridges: D:R.355 ACY.18: 7 residues within 4Å: Chain D: L.144, T.145, N.146, R.181, P.196, S.197, I.198 5 PLIP interactions: 5 interactions with chain D Hydrogen bonds: D:T.145, D:S.197, D:I.198 Water bridges: D:S.197 Salt bridges: D:R.181 ACY.19: 4 residues within 4Å: Chain D: Y.60, L.72, D.79, R.82 6 PLIP interactions: 6 interactions with chain D Hydrophobic interactions: D:Y.60, D:L.72 Water bridges: D:E.61, D:E.61, D:R.82 Salt bridges: D:R.82

4 x GOL: GLYCEROL(Non-functional Binders)

GOL.5: 8 residues within 4Å: Chain A: L.384, I.385, T.386, L.387, R.420, W.423 Chain C: R.225, E.226 3 PLIP interactions: 1 interactions with chain C, 2 interactions with chain A Hydrogen bonds: C:E.226, A:I.385, A:L.387 GOL.10: 8 residues within 4Å: Chain B: L.384, I.385, T.386, L.387, R.420, W.423 Chain D: R.225, E.226 3 PLIP interactions: 1 interactions with chain D, 2 interactions with chain B Hydrogen bonds: D:E.226, B:I.385, B:L.387 GOL.15: 8 residues within 4Å: Chain A: R.225, E.226 Chain C: L.384, I.385, T.386, L.387, R.420, W.423 3 PLIP interactions: 2 interactions with chain C, 1 interactions with chain A Hydrogen bonds: C:I.385, C:L.387, A:E.226 GOL.20: 8 residues within 4Å: Chain B: R.225, E.226 Chain D: L.384, I.385, T.386, L.387, R.420, W.423 3 PLIP interactions: 1 interactions with chain B, 2 interactions with chain D Hydrogen bonds: B:E.226, D:I.385, D:L.387

Links

RCSB   PDBe   PDBe-KB   PDBj   PDBsum   CATH   PLIP

Citation

Kim, S.-H. et al., Crystal Structure of the Oxygenase Component (HpaB) of the 4-Hydroxyphenylacetate 3-Monooxygenase from Thermus thermophilus HB8. J.Biol.Chem. (2007)

Release Date

2007-09-04

Peptides

4-hydroxyphenylacetate-3-hydroxylase: ABCD

SMTL:PDB

SMTL Chain Id:
PDB Chain Id:

A
A

B
A

C
A

D
A

4-hydroxyphenylacetate-3-hydroxylase

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