SMTL ID : 2yzn.1 (1 other biounit)

Crystal structure of D-alanine:D-Alanine Ligase with AMPPNP from Thermus thermophilus HB8.

Coordinates

PDB Format

Method

X-RAY DIFFRACTION 2.60 Å

Oligo State

homo-dimer

Ligands

2 x ANP: PHOSPHOAMINOPHOSPHONIC ACID-ADENYLATE ESTER(Non-covalent)

ANP.1: 16 residues within 4Å: Chain A: K.116, V.131, F.151, K.153, T.157, S.160, I.163, E.189, K.190, A.191, L.192, V.195, E.197, F.272, N.281, E.282 15 PLIP interactions: 15 interactions with chain A Hydrogen bonds: A:K.116, A:K.153, A:T.157, A:S.160, A:E.189, A:E.189, A:L.192, A:E.197, A:N.281, A:E.282, A:E.282 Salt bridges: A:K.116, A:K.153 pi-Stacking: A:F.151, A:F.151 ANP.2: 17 residues within 4Å: Chain B: K.116, V.131, F.151, K.153, T.157, G.158, S.159, S.160, I.163, E.189, K.190, A.191, L.192, E.197, F.272, N.281, E.282 15 PLIP interactions: 15 interactions with chain B Hydrogen bonds: B:M.114, B:K.116, B:K.153, B:S.159, B:E.189, B:L.192, B:E.197, B:E.197, B:N.281, B:E.282, B:E.282 Water bridges: B:N.281 Salt bridges: B:K.153 pi-Stacking: B:F.151, B:F.151

Links

RCSB   PDBe   PDBe-KB   PDBj   PDBsum   CATH   PLIP

Citation

Kitamura, Y. et al., Crystal structure of D-alanine:D-Alanine Ligase with AMPPNP from Thermus thermophilus HB8. To be Published

Release Date

2007-11-06

Peptides

D-alanine-D-alanine ligase: AB

SMTL:PDB

SMTL Chain Id:
PDB Chain Id:

A
A

B
B

D-alanine-D-alanine ligase

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