SMTL ID : 2yzr.1

Crystal structure of pyridoxine biosynthesis protein from Methanocaldococcus jannaschii

Coordinates

PDB Format

Method

X-RAY DIFFRACTION 2.30 Å

Oligo State

homo-12-mer

Ligands

36 x CL: CHLORIDE ION(Non-functional Binders)

CL.1: 5 residues within 4Å: Chain A: L.210, E.211 Chain C: Y.182, G.183, K.186 Ligand excluded by PLIP CL.2: 5 residues within 4Å: Chain A: Y.182, G.183, K.186 Chain C: L.210, E.211 Ligand excluded by PLIP CL.3: 3 residues within 4Å: Chain B: E.133, R.136, R.137 Ligand excluded by PLIP CL.4: 3 residues within 4Å: Chain C: E.133, R.136, R.137 Ligand excluded by PLIP CL.5: 5 residues within 4Å: Chain B: L.210, E.211 Chain E: Y.182, G.183, K.186 Ligand excluded by PLIP CL.6: 3 residues within 4Å: Chain A: R.136, R.137, R.191 Ligand excluded by PLIP CL.7: 3 residues within 4Å: Chain A: R.240, L.241, N.245 Ligand excluded by PLIP CL.8: 3 residues within 4Å: Chain C: R.240, L.241, N.245 Ligand excluded by PLIP CL.9: 3 residues within 4Å: Chain B: R.240, L.241, N.245 Ligand excluded by PLIP CL.10: 5 residues within 4Å: Chain D: L.210, E.211 Chain F: Y.182, G.183, K.186 Ligand excluded by PLIP CL.11: 5 residues within 4Å: Chain D: Y.182, G.183, K.186 Chain F: L.210, E.211 Ligand excluded by PLIP CL.12: 3 residues within 4Å: Chain E: E.133, R.136, R.137 Ligand excluded by PLIP CL.13: 3 residues within 4Å: Chain F: E.133, R.136, R.137 Ligand excluded by PLIP CL.14: 5 residues within 4Å: Chain B: Y.182, G.183, K.186 Chain E: L.210, E.211 Ligand excluded by PLIP CL.15: 3 residues within 4Å: Chain D: R.136, R.137, R.191 Ligand excluded by PLIP CL.16: 3 residues within 4Å: Chain D: R.240, L.241, N.245 Ligand excluded by PLIP CL.17: 3 residues within 4Å: Chain F: R.240, L.241, N.245 Ligand excluded by PLIP CL.18: 3 residues within 4Å: Chain E: R.240, L.241, N.245 Ligand excluded by PLIP CL.19: 5 residues within 4Å: Chain G: L.210, E.211 Chain I: Y.182, G.183, K.186 Ligand excluded by PLIP CL.20: 5 residues within 4Å: Chain G: Y.182, G.183, K.186 Chain I: L.210, E.211 Ligand excluded by PLIP CL.21: 3 residues within 4Å: Chain H: E.133, R.136, R.137 Ligand excluded by PLIP CL.22: 3 residues within 4Å: Chain I: E.133, R.136, R.137 Ligand excluded by PLIP CL.23: 5 residues within 4Å: Chain H: L.210, E.211 Chain K: Y.182, G.183, K.186 Ligand excluded by PLIP CL.24: 3 residues within 4Å: Chain G: R.136, R.137, R.191 Ligand excluded by PLIP CL.25: 3 residues within 4Å: Chain G: R.240, L.241, N.245 Ligand excluded by PLIP CL.26: 3 residues within 4Å: Chain I: R.240, L.241, N.245 Ligand excluded by PLIP CL.27: 3 residues within 4Å: Chain H: R.240, L.241, N.245 Ligand excluded by PLIP CL.28: 5 residues within 4Å: Chain J: L.210, E.211 Chain L: Y.182, G.183, K.186 Ligand excluded by PLIP CL.29: 5 residues within 4Å: Chain J: Y.182, G.183, K.186 Chain L: L.210, E.211 Ligand excluded by PLIP CL.30: 3 residues within 4Å: Chain K: E.133, R.136, R.137 Ligand excluded by PLIP CL.31: 3 residues within 4Å: Chain L: E.133, R.136, R.137 Ligand excluded by PLIP CL.32: 5 residues within 4Å: Chain H: Y.182, G.183, K.186 Chain K: L.210, E.211 Ligand excluded by PLIP CL.33: 3 residues within 4Å: Chain J: R.136, R.137, R.191 Ligand excluded by PLIP CL.34: 3 residues within 4Å: Chain J: R.240, L.241, N.245 Ligand excluded by PLIP CL.35: 3 residues within 4Å: Chain L: R.240, L.241, N.245 Ligand excluded by PLIP CL.36: 3 residues within 4Å: Chain K: R.240, L.241, N.245 Ligand excluded by PLIP

Links

RCSB   PDBe   PDBe-KB   PDBj   PDBsum   CATH   PLIP

Citation

Manzoku, M. et al., Crystal structure of pyridoxine biosynthesis protein from Methanocaldococcus jannaschii. to be published

Release Date

2007-11-06

Peptides

Pyridoxal biosynthesis lyase pdxS: ABCDEFGHIJKL

SMTL:PDB

SMTL Chain Id:
PDB Chain Id:

A
A

B
B

C
C

D
A

E
B

F
C

G
A

H
B

I
C

J
A

K
B

L
C

Pyridoxal biosynthesis lyase pdxS