SMTL ID : 2z09.1

Crystal structure of uncharacterized conserved protein from Thermus thermophilus HB8

Coordinates

PDB Format

Method

X-RAY DIFFRACTION 1.65 Å

Oligo State

homo-tetramer

Ligands

8 x MG: MAGNESIUM ION(Non-functional Binders)

MG.1: 1 residues within 4Å: Ligands: ACP.3 No protein-ligand interaction detected (PLIP) MG.2: 3 residues within 4Å: Ligands: ACP.3, MG.5, ACP.6 No protein-ligand interaction detected (PLIP) MG.4: 1 residues within 4Å: Ligands: ACP.6 No protein-ligand interaction detected (PLIP) MG.5: 3 residues within 4Å: Ligands: MG.2, ACP.3, ACP.6 No protein-ligand interaction detected (PLIP) MG.7: 1 residues within 4Å: Ligands: ACP.9 No protein-ligand interaction detected (PLIP) MG.8: 3 residues within 4Å: Ligands: ACP.9, MG.11, ACP.12 No protein-ligand interaction detected (PLIP) MG.10: 1 residues within 4Å: Ligands: ACP.12 No protein-ligand interaction detected (PLIP) MG.11: 3 residues within 4Å: Ligands: MG.8, ACP.9, ACP.12 No protein-ligand interaction detected (PLIP)

4 x ACP: PHOSPHOMETHYLPHOSPHONIC ACID ADENYLATE ESTER(Non-covalent)

ACP.3: 25 residues within 4Å: Chain A: A.8, Y.9, D.10, S.12, V.36, H.37, A.38, P.87, I.91, M.105, G.106, R.108, G.109, L.110, G.111, A.112, L.116, G.119, S.120, Q.121, S.122 Chain B: R.124 Ligands: MG.1, MG.2, MG.5 21 PLIP interactions: 18 interactions with chain A, 3 interactions with chain B Hydrogen bonds: A:D.10, A:S.12, A:H.37, A:A.38, A:A.38, A:G.106, A:R.108, A:R.108, A:G.109, A:G.111, A:S.120, A:S.120, A:Q.121, A:S.122, B:R.124, B:R.124 Water bridges: A:L.110, A:S.120, A:Q.121, A:Q.121, B:Q.121 ACP.6: 25 residues within 4Å: Chain A: R.124 Chain B: A.8, Y.9, D.10, S.12, V.36, H.37, A.38, P.87, I.91, M.105, G.106, R.108, G.109, L.110, G.111, A.112, L.116, G.119, S.120, Q.121, S.122 Ligands: MG.2, MG.4, MG.5 21 PLIP interactions: 18 interactions with chain B, 3 interactions with chain A Hydrogen bonds: B:D.10, B:S.12, B:H.37, B:A.38, B:A.38, B:G.106, B:R.108, B:R.108, B:G.109, B:G.111, B:S.120, B:S.120, B:Q.121, B:S.122, A:R.124, A:R.124 Water bridges: B:L.110, B:S.120, B:Q.121, B:Q.121, A:Q.121 ACP.9: 25 residues within 4Å: Chain C: A.8, Y.9, D.10, S.12, V.36, H.37, A.38, P.87, I.91, M.105, G.106, R.108, G.109, L.110, G.111, A.112, L.116, G.119, S.120, Q.121, S.122 Chain D: R.124 Ligands: MG.7, MG.8, MG.11 20 PLIP interactions: 3 interactions with chain D, 17 interactions with chain C Hydrogen bonds: D:R.124, D:R.124, C:S.12, C:A.38, C:A.38, C:G.106, C:R.108, C:R.108, C:G.109, C:G.111, C:S.120, C:S.120, C:Q.121, C:S.122 Water bridges: D:Q.121, C:R.58, C:L.110, C:S.120, C:Q.121, C:Q.121 ACP.12: 25 residues within 4Å: Chain C: R.124 Chain D: A.8, Y.9, D.10, S.12, V.36, H.37, A.38, P.87, I.91, M.105, G.106, R.108, G.109, L.110, G.111, A.112, L.116, G.119, S.120, Q.121, S.122 Ligands: MG.8, MG.10, MG.11 20 PLIP interactions: 17 interactions with chain D, 3 interactions with chain C Hydrogen bonds: D:S.12, D:A.38, D:A.38, D:G.106, D:R.108, D:R.108, D:G.109, D:G.111, D:S.120, D:S.120, D:Q.121, D:S.122, C:R.124, C:R.124 Water bridges: D:R.58, D:L.110, D:S.120, D:Q.121, D:Q.121, C:Q.121

Links

RCSB   PDBe   PDBe-KB   PDBj   PDBsum   CATH   PLIP

Citation

Iino, H. et al., Crystal structure of uncharacterized conserved protein from Thermus thermophilus HB8. To be Published

Release Date

2007-11-13

Peptides

Universal stress protein family: ABCD

SMTL:PDB

SMTL Chain Id:
PDB Chain Id:

A
A

B
A

C
A

D
A

Universal stress protein family

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