SMTL ID : 2z1u.1

Crystal Structure of Hydrogenase Maturation Protein HypE in complex with ATP

Coordinates

PDB Format

Method

X-RAY DIFFRACTION 2.00 Å

Oligo State

homo-dimer

Ligands

4 x MG: MAGNESIUM ION(Non-covalent)

MG.1: 3 residues within 4Å: Chain A: D.56 Chain B: D.129 Ligands: ATP.3 3 PLIP interactions: 1 interactions with chain A, 1 interactions with chain B, 1 Ligand-Water interactions Metal complexes: A:D.56, B:D.129, H2O.5 MG.2: 4 residues within 4Å: Chain A: D.81, D.220 Chain B: D.41 Ligands: ATP.3 5 PLIP interactions: 1 interactions with chain B, 3 interactions with chain A, 1 Ligand-Water interactions Metal complexes: B:D.41, A:D.81, A:D.220, A:D.220, H2O.4 MG.4: 3 residues within 4Å: Chain A: D.129 Chain B: D.56 Ligands: ATP.6 3 PLIP interactions: 1 interactions with chain A, 1 interactions with chain B, 1 Ligand-Water interactions Metal complexes: A:D.129, B:D.56, H2O.12 MG.5: 4 residues within 4Å: Chain A: D.41 Chain B: D.81, D.220 Ligands: ATP.6 5 PLIP interactions: 3 interactions with chain B, 1 interactions with chain A, 1 Ligand-Water interactions Metal complexes: B:D.81, B:D.220, B:D.220, A:D.41, H2O.11

2 x ATP: ADENOSINE-5'-TRIPHOSPHATE(Non-covalent)

ATP.3: 21 residues within 4Å: Chain A: D.56, D.81, D.220, T.222, R.223 Chain B: I.23, F.27, F.31, L.36, L.39, N.40, D.41, C.94, F.96, T.127, G.128, D.129, T.130, K.131 Ligands: MG.1, MG.2 17 PLIP interactions: 12 interactions with chain B, 5 interactions with chain A Hydrogen bonds: B:L.39, B:T.127, B:T.127, B:G.128, B:D.129, B:D.129, B:T.130, A:T.222, A:R.223, A:R.223 Water bridges: B:T.130, B:T.130, B:K.131, B:K.131, A:T.222 Salt bridges: B:K.131, A:R.223 ATP.6: 21 residues within 4Å: Chain A: I.23, F.27, F.31, L.36, L.39, N.40, D.41, C.94, F.96, T.127, G.128, D.129, T.130, K.131 Chain B: D.56, D.81, D.220, T.222, R.223 Ligands: MG.4, MG.5 16 PLIP interactions: 11 interactions with chain A, 5 interactions with chain B Hydrogen bonds: A:L.39, A:D.41, A:T.127, A:G.128, A:D.129, A:T.130, A:T.130, B:T.222, B:R.223, B:R.223 Water bridges: A:T.130, A:K.131, A:K.131, B:T.222 Salt bridges: A:K.131, B:R.223

Links

RCSB   PDBe   PDBe-KB   PDBj   PDBsum   CATH   PLIP

Citation

Shomura, Y. et al., Crystal Structures of Hydrogenase Maturation Protein HypE in the Apo and ATP-bound Forms. J.Mol.Biol. (2007)

Release Date

2007-10-09

Peptides

Hydrogenase expression/formation protein HypE: AB

SMTL:PDB

SMTL Chain Id:
PDB Chain Id:

A
A

B
A

Hydrogenase expression/formation protein HypE

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