SMTL ID : 2z3g.1

Crystal structure of blasticidin S deaminase (BSD)

Coordinates

PDB Format

Method

X-RAY DIFFRACTION 1.50 Å

Oligo State

homo-tetramer

Ligands

1 x GLC- GLC: alpha-D-glucopyranose-(1-1)-alpha-D-glucopyranose(Non-covalent)

GLC-GLC.1: 1 residues within 4Å: Chain B: W.128 No protein-ligand interaction detected (PLIP)

4 x ZN: ZINC ION(Non-covalent)

ZN.2: 3 residues within 4Å: Chain A: C.54, C.88, C.91 4 PLIP interactions: 3 interactions with chain A, 1 Ligand-Water interactions Metal complexes: A:C.54, A:C.88, A:C.91, H2O.5 ZN.3: 3 residues within 4Å: Chain B: C.54, C.88, C.91 4 PLIP interactions: 3 interactions with chain B, 1 Ligand-Water interactions Metal complexes: B:C.54, B:C.88, B:C.91, H2O.8 ZN.4: 3 residues within 4Å: Chain C: C.54, C.88, C.91 4 PLIP interactions: 3 interactions with chain C, 1 Ligand-Water interactions Metal complexes: C:C.54, C:C.88, C:C.91, H2O.16 ZN.5: 3 residues within 4Å: Chain D: C.54, C.88, C.91 4 PLIP interactions: 3 interactions with chain D, 1 Ligand-Water interactions Metal complexes: D:C.54, D:C.88, D:C.91, H2O.25

Links

RCSB   PDBe   PDBe-KB   PDBj   PDBsum   CATH   PLIP

Citation

Kumasaka, T. et al., Crystal structures of blasticidin S deaminase (BSD): implications for dynamic properties of catalytic zinc. J.Biol.Chem. (2007)

Release Date

2007-10-23

Peptides

Blasticidin-S deaminase: ABCD

SMTL:PDB

SMTL Chain Id:
PDB Chain Id:

A
A

B
B

C
C

D
D

Blasticidin-S deaminase

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