- Coordinates
- PDB Format
- Method
- X-RAY DIFFRACTION 1.50 Å
- Oligo State
- homo-tetramer
- Ligands
- 4 x ZN: ZINC ION(Non-covalent)
- 4 x BLO: 1-(4-{[(3R)-3-AMINO-5-{[(Z)-AMINO(IMINO)METHYL](METHYL)AMINO}PENTANOYL]AMINO}-2,3,4-TRIDEOXY-D-ERYTHRO-HEX-2-ENOPYRANURONOSYL)-4-HYDROXYPYRIMIDIN-2(1H)-ONE(Non-covalent)
BLO.2: 17 residues within 4Å:- Chain A: E.25, D.26, S.28, V.29, N.45, Y.47, C.54, A.55, E.56, R.82, P.87, C.88, C.91
- Chain B: Y.126, W.128
- Chain C: F.49
- Ligands: ZN.1
11 PLIP interactions:1 interactions with chain B, 8 interactions with chain A, 2 interactions with chain C- Hydrophobic interactions: B:Y.126, C:F.49, C:F.49
- Hydrogen bonds: A:S.28, A:S.28, A:S.28, A:A.55, A:C.88
- Water bridges: A:N.45
- Salt bridges: A:E.25, A:R.82
BLO.4: 15 residues within 4Å:- Chain B: E.25, D.26, S.28, V.29, N.45, Y.47, C.54, A.55, E.56, R.82, P.87, C.88, C.91
- Chain D: F.49
- Ligands: ZN.3
12 PLIP interactions:10 interactions with chain B, 2 interactions with chain D- Hydrogen bonds: B:S.28, B:S.28, B:S.28, B:A.55, B:C.88
- Water bridges: B:E.25, B:N.45
- Salt bridges: B:E.25, B:D.26, B:R.82
- Hydrophobic interactions: D:F.49, D:F.49
BLO.6: 15 residues within 4Å:- Chain A: F.49
- Chain C: E.25, D.26, S.28, V.29, N.45, Y.47, C.54, A.55, E.56, R.82, P.87, C.88, C.91
- Ligands: ZN.5
15 PLIP interactions:13 interactions with chain C, 2 interactions with chain A- Hydrogen bonds: C:E.25, C:S.28, C:S.28, C:S.28, C:A.55, C:C.88
- Water bridges: C:D.26, C:D.26, C:D.26, C:N.45
- Salt bridges: C:E.25, C:D.26, C:R.82
- Hydrophobic interactions: A:F.49, A:F.49
BLO.8: 15 residues within 4Å:- Chain B: F.49
- Chain D: E.25, D.26, S.28, V.29, N.45, Y.47, C.54, A.55, E.56, R.82, P.87, C.88, C.91
- Ligands: ZN.7
11 PLIP interactions:9 interactions with chain D, 2 interactions with chain B- Hydrogen bonds: D:S.28, D:S.28, D:S.28, D:A.55, D:C.88
- Water bridges: D:N.45
- Salt bridges: D:E.25, D:D.26, D:R.82
- Hydrophobic interactions: B:F.49, B:F.49
- Links
- RCSB PDBe PDBe-KB PDBj PDBsum CATH PLIP
- Citation
- Kumasaka, T. et al., Crystal structures of blasticidin S deaminase (BSD): implications for dynamic properties of catalytic zinc. J.Biol.Chem. (2007)
- Release Date
- 2007-10-23
- Peptides
- Blasticidin-S deaminase: ABCD
- SMTL:PDB
- SMTL Chain Id:
PDB Chain Id:A
AB
BC
CD
D
- Coordinates
- PDB Format
- Method
- X-RAY DIFFRACTION 1.50 Å
- Oligo State
- homo-tetramer
- Ligands
- 4 x ZN: ZINC ION(Non-covalent)
- 4 x BLO: 1-(4-{[(3R)-3-AMINO-5-{[(Z)-AMINO(IMINO)METHYL](METHYL)AMINO}PENTANOYL]AMINO}-2,3,4-TRIDEOXY-D-ERYTHRO-HEX-2-ENOPYRANURONOSYL)-4-HYDROXYPYRIMIDIN-2(1H)-ONE(Non-covalent)
- Links
- RCSB PDBe PDBe-KB PDBj PDBsum CATH PLIP
- Citation
- Kumasaka, T. et al., Crystal structures of blasticidin S deaminase (BSD): implications for dynamic properties of catalytic zinc. J.Biol.Chem. (2007)
- Release Date
- 2007-10-23
- Peptides
- Blasticidin-S deaminase: ABCD
- SMTL:PDB
- SMTL Chain Id:
PDB Chain Id:A
AB
BC
CD
D