SMTL ID : 2z3u.1

Crystal Structure of Chromopyrrolic Acid Bound Cytochrome P450 StaP (CYP245A1)

Coordinates

PDB Format

Method

X-RAY DIFFRACTION 2.40 Å

Oligo State

monomer

Ligands

1 x HEM: PROTOPORPHYRIN IX CONTAINING FE(Non-covalent)

HEM.1: 29 residues within 4Å: Chain A: R.67, L.98, V.99, H.106, R.110, F.117, I.161, H.250, L.251, A.254, G.255, T.258, T.259, M.295, P.300, V.304, R.306, L.329, G.356, F.357, G.358, I.361, H.362, C.364, L.365, G.366, A.370, E.373 Ligands: CRR.2 20 PLIP interactions: 20 interactions with chain A, Hydrophobic interactions: A:L.98, A:V.99, A:F.117, A:I.161, A:L.251, A:P.300, A:V.304, A:L.329, A:F.357, A:L.365, A:L.365, A:A.370 Hydrogen bonds: A:V.99 Salt bridges: A:R.67, A:H.106, A:R.110, A:R.306, A:H.362 pi-Stacking: A:F.357 Metal complexes: A:C.364

3 x CRR: 3,4-DI-1H-INDOL-3-YL-1H-PYRROLE-2,5-DICARBOXYLIC ACID(Non-covalent)

CRR.2: 16 residues within 4Å: Chain A: R.67, W.97, V.99, F.100, Q.183, A.185, S.186, T.187, H.250, A.254, V.301, V.304, T.305, V.402, F.403 Ligands: HEM.1 18 PLIP interactions: 18 interactions with chain A Hydrophobic interactions: A:F.100, A:A.254, A:V.301, A:V.402 Hydrogen bonds: A:Q.183, A:Q.183, A:T.187, A:T.305 Water bridges: A:T.187, A:T.187, A:H.250, A:A.303 Salt bridges: A:R.67 pi-Stacking: A:W.97, A:F.100, A:F.403, A:F.403, A:F.403 CRR.3: 14 residues within 4Å: Chain A: S.40, G.43, K.44, P.45, T.47, A.69, A.79, P.80, V.81, P.82, T.187, T.305, W.307, R.324 14 PLIP interactions: 14 interactions with chain A Hydrophobic interactions: A:K.44, A:P.82, A:W.307 Hydrogen bonds: A:A.79, A:P.80, A:T.305, A:W.307, A:W.307 Water bridges: A:T.187, A:T.187, A:R.324 Salt bridges: A:R.324 pi-Stacking: A:W.307 pi-Cation interactions: A:R.324 CRR.4: 9 residues within 4Å: Chain A: R.145, A.392, H.393, E.394, V.395, R.408, L.410, L.411, D.412 10 PLIP interactions: 10 interactions with chain A Hydrophobic interactions: A:E.394, A:E.394, A:L.410, A:D.412 Hydrogen bonds: A:E.394 Water bridges: A:R.144, A:R.144 Salt bridges: A:R.144, A:R.145, A:R.408

4 x EDO: 1,2-ETHANEDIOL(Non-functional Binders)

EDO.5: 7 residues within 4Å: Chain A: L.11, M.12, G.13, W.14, T.188, D.399, M.401 2 PLIP interactions: 2 interactions with chain A Hydrogen bonds: A:G.13, A:W.14 EDO.6: 4 residues within 4Å: Chain A: R.63, L.65, D.102, Y.309 1 PLIP interactions: 1 interactions with chain A Water bridges: A:D.102 EDO.7: 5 residues within 4Å: Chain A: P.103, H.106, T.107, R.110, I.361 1 PLIP interactions: 1 interactions with chain A Hydrogen bonds: A:H.106 EDO.8: 5 residues within 4Å: Chain A: N.178, A.181, R.198, A.201, A.202 2 PLIP interactions: 2 interactions with chain A Water bridges: A:N.178, A:E.205

Links

RCSB   PDBe   PDBe-KB   PDBj   PDBsum   CATH   PLIP

Citation

Makino, M. et al., Crystal structures and catalytic mechanism of cytochrome P450 StaP that produces the indolocarbazole skeleton. Proc.Natl.Acad.Sci.Usa (2007)

Release Date

2007-07-03

Peptides

Cytochrome P450: A

SMTL:PDB

SMTL Chain Id:
PDB Chain Id:

A
A

Cytochrome P450

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