SMTL ID : 2z70.1

E.coli RNase 1 in complex with d(CGCGATCGCG)

Coordinates

PDB Format

Method

X-RAY DIFFRACTION 1.70 Å

Oligo State

monomer

Ligands

1 x DG- DC- DG- DG: DNA (5'-D(*DCP*DGP*DCP*DGP*DAP*DTP*DCP*DGP*DCP*DG)-3')(Non-covalent)

DG-DC-DG-DG.1: 20 residues within 4Å: Chain A: R.13, V.15, S.19, Q.21, F.24, R.36, H.55, W.58, R.74, M.76, F.78, A.81, T.82, R.83, A.93, L.125, Y.128, K.132, H.133, Q.208 Protein-ligand interaction information (PLIP) not available

1 x CA: CALCIUM ION(Non-covalent)

CA.2: 4 residues within 4Å: Chain A: Q.26, D.241, K.242, G.244 5 PLIP interactions: 3 interactions with chain A, 2 Ligand-Water interactions Metal complexes: A:D.241, A:K.242, A:G.244, H2O.1, H2O.9

Links

RCSB   PDBe   PDBe-KB   PDBj   PDBsum   CATH   PLIP

Citation

Rodriguez, S.M. et al., Nonspecific base recognition mediated by water bridges and hydrophobic stacking in ribonuclease I from Escherichia coli. Protein Sci. (2008)

Release Date

2008-06-24

Peptides

Ribonuclease I: A

SMTL:PDB

SMTL Chain Id:
PDB Chain Id:

A
A

Ribonuclease I

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