SMTL ID : 2z81.1

Crystal structure of the TLR1-TLR2 heterodimer induced by binding of a tri-acylated lipopeptide

Coordinates

PDB Format

Method

X-RAY DIFFRACTION 1.80 Å

Oligo State

monomer

Ligands

1 x NAG- NAG- BMA: beta-D-mannopyranose-(1-4)-2-acetamido-2-deoxy-beta-D-glucopyranose-(1-4)-2-acetamido-2-deoxy-beta-D-glucopyranose

NAG-NAG-BMA.1: 3 residues within 4Å: Chain A: P.361, K.387, N.388 No protein-ligand interaction detected (PLIP)

1 x NAG- NAG- MAN: alpha-D-mannopyranose-(1-4)-2-acetamido-2-deoxy-beta-D-glucopyranose-(1-4)-2-acetamido-2-deoxy-beta-D-glucopyranose

NAG-NAG-MAN.2: 7 residues within 4Å: Chain A: S.395, R.396, F.414, N.416, D.437, E.455, R.460 1 PLIP interactions: 1 interactions with chain A Hydrogen bonds: A:R.460

1 x NAG: 2-acetamido-2-deoxy-beta-D-glucopyranose(Post Translational Modification)

NAG.3: 1 residues within 4Å: Chain A: N.121 1 PLIP interactions: 1 interactions with chain A Hydrogen bonds: A:N.121

1 x PCJ: (2R)-3-{[(2S)-3-HYDROXY-2-(PALMITOYLAMINO)PROPYL]THIO}PROPANE-1,2-DIYL DIHEXADECANOATE(Non-covalent)

PCJ.4: 21 residues within 4Å: Chain A: L.235, F.240, L.244, V.256, F.258, L.263, L.280, V.286, I.288, L.291, F.296, L.309, V.317, S.320, K.321, V.322, F.323, L.324, V.325, P.326, F.329 19 PLIP interactions: 19 interactions with chain A Hydrophobic interactions: A:L.235, A:F.240, A:F.240, A:F.240, A:L.244, A:V.256, A:F.258, A:F.258, A:L.263, A:L.280, A:I.288, A:L.291, A:L.309, A:V.317, A:V.322, A:F.323, A:V.325 Hydrogen bonds: A:F.323, A:L.324

Links

RCSB   PDBe   PDBe-KB   PDBj   PDBsum   CATH   PLIP

Citation

Jin, M.S. et al., Crystal Structure of the TLR1-TLR2 Heterodimer Induced by Binding of a Tri-Acylated Lipopeptide. Cell(Cambridge,Mass.) (2007)

Release Date

2007-10-02

Peptides

Toll-like receptor 2, Variable lymphocyte receptor B: A

SMTL:PDB

SMTL Chain Id:
PDB Chain Id:

A
A

Toll-like receptor 2, Variable lymphocyte receptor B

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