- Coordinates
- PDB Format
- Method
- X-RAY DIFFRACTION 2.40 Å
- Oligo State
- homo-dimer
- Ligands
- 3 x UGA: URIDINE-5'-DIPHOSPHATE-GLUCURONIC ACID(Non-covalent)
UGA.1: 19 residues within 4Å:- Chain A: P.100, T.101, Y.102, R.104, D.131, G.159, Y.160, L.162, R.166, D.182, C.183, D.184, R.211, G.278, G.279, E.304, D.305, H.329
- Ligands: MN.3
16 PLIP interactions:16 interactions with chain A- Hydrophobic interactions: A:Y.102, A:Y.160
- Hydrogen bonds: A:Y.102, A:D.131, A:Y.160, A:R.166, A:R.166, A:D.182, A:D.182, A:C.183, A:S.277, A:G.278, A:D.305
- Salt bridges: A:R.104, A:R.211, A:H.329
UGA.2: 18 residues within 4Å:- Chain A: P.382, A.383, Y.384, D.412, N.439, I.442, A.445, Q.460, D.462, S.463, D.464, H.524, R.526, N.545, A.546, V.547, D.548
- Ligands: MN.4
13 PLIP interactions:13 interactions with chain A- Hydrogen bonds: A:Y.384, A:D.412, A:D.412, A:N.439, A:D.462, A:S.463, A:S.463, A:H.524, A:R.526, A:A.546, A:V.547, A:D.548, A:D.548
UGA.6: 22 residues within 4Å:- Chain B: P.382, A.383, Y.384, D.412, N.439, G.441, I.442, A.445, Q.460, D.462, S.463, D.464, H.524, R.526, N.545, A.546, V.547, D.548, R.571, H.574, G.575
- Ligands: MN.8
16 PLIP interactions:16 interactions with chain B- Hydrogen bonds: B:Y.384, B:D.412, B:D.412, B:D.462, B:D.462, B:S.463, B:H.524, B:R.526, B:A.546, B:V.547, B:D.548, B:R.571
- Salt bridges: B:R.571, B:R.571, B:H.574, B:H.574
- 4 x MN: MANGANESE (II) ION(Non-covalent)
MN.3: 4 residues within 4Å:- Chain A: R.104, D.184, H.329
- Ligands: UGA.1
3 PLIP interactions:2 interactions with chain A, 1 Ligand-Water interactions- Metal complexes: A:D.184, A:H.329, H2O.5
MN.4: 2 residues within 4Å:- Chain A: D.464
- Ligands: UGA.2
2 PLIP interactions:2 interactions with chain A- Metal complexes: A:D.464, A:D.464
MN.7: 4 residues within 4Å:- Chain B: R.104, D.184, H.329
- Ligands: UDP.5
3 PLIP interactions:2 interactions with chain B, 1 Ligand-Water interactions- Metal complexes: B:D.184, B:H.329, H2O.10
MN.8: 3 residues within 4Å:- Chain B: D.464, H.574
- Ligands: UGA.6
5 PLIP interactions:3 interactions with chain B, 2 Ligand-Water interactions- Metal complexes: B:D.464, B:D.464, B:H.574, H2O.10, H2O.10
- 1 x UDP: URIDINE-5'-DIPHOSPHATE(Non-covalent)
UDP.5: 13 residues within 4Å:- Chain B: P.100, T.101, Y.102, R.104, D.131, Y.160, L.162, V.165, D.182, C.183, D.184, H.329
- Ligands: MN.7
10 PLIP interactions:10 interactions with chain B- Hydrophobic interactions: B:Y.102, B:Y.160
- Hydrogen bonds: B:P.100, B:Y.102, B:D.131, B:C.183
- Water bridges: B:D.182, B:D.182, B:D.182
- Salt bridges: B:R.104
- Links
- RCSB PDBe PDBe-KB PDBj PDBsum CATH PLIP
- Citation
- Osawa, T. et al., Crystal structure of chondroitin polymerase from Escherichia coli K4. Biochem. Biophys. Res. Commun. (2009)
- Release Date
- 2008-09-16
- Peptides
- Chondroitin synthase: AB
- SMTL:PDB
- SMTL Chain Id:
PDB Chain Id:A
AB
B
- Coordinates
- PDB Format
- Method
- X-RAY DIFFRACTION 2.40 Å
- Oligo State
- homo-dimer
- Ligands
- 3 x UGA: URIDINE-5'-DIPHOSPHATE-GLUCURONIC ACID(Non-covalent)
- 4 x MN: MANGANESE (II) ION(Non-covalent)
- 1 x UDP: URIDINE-5'-DIPHOSPHATE(Non-covalent)
- Links
- RCSB PDBe PDBe-KB PDBj PDBsum CATH PLIP
- Citation
- Osawa, T. et al., Crystal structure of chondroitin polymerase from Escherichia coli K4. Biochem. Biophys. Res. Commun. (2009)
- Release Date
- 2008-09-16
- Peptides
- Chondroitin synthase: AB
- SMTL:PDB
- SMTL Chain Id:
PDB Chain Id:A
AB
B