SMTL ID : 2zab.1

Crystal Structure of Family 7 Alginate Lyase A1-II' Y284F in Cmplex with Product (GGG)

Coordinates

PDB Format Compare

Method

X-RAY DIFFRACTION 1.66 Å

Oligo State

monomer

Ligands

1 x LGU- LGU- LGU: alpha-L-gulopyranuronic acid-(1-4)-alpha-L-gulopyranuronic acid-(1-4)-alpha-L-gulopyranuronic acid

LGU-LGU-LGU.1: 17 residues within 4Å: Chain A: K.15, Q.17, E.25, T.59, A.60, N.61, S.62, R.66, R.70, Q.109, H.111, N.119, A.120, P.122, Y.198, K.200, F.204 10 PLIP interactions: 10 interactions with chain A Hydrogen bonds: A:R.66, A:R.66, A:Q.109, A:N.119, A:N.119 Water bridges: A:H.111, A:K.200 Salt bridges: A:R.66, A:H.111, A:K.200

1 x GOL: GLYCEROL(Non-functional Binders)

GOL.2: 4 residues within 4Å: Chain A: N.8, F.9, G.46, Y.220 2 PLIP interactions: 2 interactions with chain A Hydrogen bonds: A:G.46 Water bridges: A:N.8

Links

RCSB   PDBe   PDBe-KB   PDBj   PDBsum   CATH   PLIP

Citation

Ogura, K. et al., Substrate Recognition in Tunnel of Family 7 Alginate Lyase from Sphingomonas sp. A1. To be Published

Release Date

2008-05-27

Peptides

Alginate lyase: A

SMTL:PDB

SMTL Chain Id:
PDB Chain Id:

A
A

Alginate lyase

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