SMTL ID : 2zbl.1

Functional annotation of Salmonella enterica yihS-encoded protein

Coordinates

PDB Format

Method

X-RAY DIFFRACTION 1.60 Å

Oligo State

homo-hexamer

Ligands

6 x BMA: beta-D-mannopyranose(Non-covalent)

BMA.1: 11 residues within 4Å: Chain A: R.55, Y.111, N.172, M.175, H.176, R.238, F.239, E.251, W.316, W.375, H.383 13 PLIP interactions: 13 interactions with chain A Hydrogen bonds: A:R.55, A:R.55, A:Y.111, A:N.172, A:H.176, A:R.238, A:E.251 Water bridges: A:N.172, A:Y.300, A:Y.300 Salt bridges: A:R.55, A:H.176, A:H.383 BMA.2: 11 residues within 4Å: Chain B: R.55, Y.111, N.172, M.175, H.176, R.238, F.239, E.251, W.316, W.375, H.383 13 PLIP interactions: 13 interactions with chain B Hydrogen bonds: B:R.55, B:R.55, B:Y.111, B:N.172, B:H.176, B:R.238, B:E.251 Water bridges: B:T.245, B:T.245, B:Q.379 Salt bridges: B:R.55, B:H.176, B:H.383 BMA.3: 11 residues within 4Å: Chain C: R.55, Y.111, N.172, M.175, H.176, R.238, F.239, E.251, W.316, W.375, H.383 13 PLIP interactions: 13 interactions with chain C Hydrogen bonds: C:R.55, C:R.55, C:N.172, C:H.176, C:R.238, C:E.251 Water bridges: C:T.245, C:T.245, C:Y.300, C:Y.300 Salt bridges: C:R.55, C:H.176, C:H.383 BMA.4: 11 residues within 4Å: Chain D: R.55, Y.111, N.172, M.175, H.176, R.238, F.239, E.251, W.316, W.375, H.383 13 PLIP interactions: 13 interactions with chain D Hydrogen bonds: D:R.55, D:R.55, D:N.172, D:H.176, D:R.238, D:E.251 Water bridges: D:N.172, D:T.245, D:Y.300, D:Y.300 Salt bridges: D:R.55, D:H.176, D:H.383 BMA.5: 11 residues within 4Å: Chain E: R.55, Y.111, N.172, M.175, H.176, R.238, F.239, E.251, W.316, W.375, H.383 11 PLIP interactions: 11 interactions with chain E Hydrogen bonds: E:R.55, E:R.55, E:Y.111, E:N.172, E:H.176, E:R.238, E:E.251 Water bridges: E:N.172 Salt bridges: E:R.55, E:H.176, E:H.383 BMA.6: 11 residues within 4Å: Chain F: R.55, Y.111, N.172, M.175, H.176, R.238, F.239, E.251, W.316, W.375, H.383 10 PLIP interactions: 10 interactions with chain F Hydrogen bonds: F:R.55, F:R.55, F:N.172, F:H.176, F:R.238, F:E.251 Water bridges: F:N.172 Salt bridges: F:R.55, F:H.176, F:H.383

Links

RCSB   PDBe   PDBe-KB   PDBj   PDBsum   CATH   PLIP

Citation

Itoh, T. et al., Crystal structure of YihS in complex with D-mannose: structural annotation of Escherichia coli and Salmonella enterica yihS-encoded proteins to an aldose-ketose isomerase. J.Mol.Biol. (2008)

Release Date

2008-02-05

Peptides

Putative isomerase: ABCDEF

SMTL:PDB

SMTL Chain Id:
PDB Chain Id:

A
A

B
B

C
C

D
D

E
E

F
F

Putative isomerase