- Coordinates
- PDB Format
- Method
- X-RAY DIFFRACTION 2.30 Å
- Oligo State
- homo-dimer
- Ligands
- 4 x DAL: D-ALANINE(Non-covalent)
- 2 x ATP: ADENOSINE-5'-TRIPHOSPHATE(Non-covalent)
ATP.3: 26 residues within 4Å:- Chain A: K.116, V.131, F.151, K.153, T.157, G.158, S.159, S.160, I.163, E.189, K.190, A.191, L.192, E.197, Y.218, F.222, Y.223, K.228, R.268, D.270, F.272, N.281, E.282, N.284
- Ligands: DAL.1, DAL.2
24 PLIP interactions:24 interactions with chain A- Hydrogen bonds: A:K.153, A:G.158, A:S.159, A:S.160, A:E.189, A:E.189, A:L.192, A:E.197, A:Y.223, A:N.281, A:E.282, A:E.282, A:N.284, A:N.284
- Water bridges: A:R.268
- Salt bridges: A:K.116, A:K.116, A:K.153, A:K.228, A:K.228, A:K.228, A:R.268
- pi-Stacking: A:F.151, A:F.151
ATP.6: 27 residues within 4Å:- Chain B: K.116, V.131, F.151, K.153, T.157, G.158, S.159, S.160, I.163, E.189, K.190, A.191, L.192, V.195, E.197, Y.218, F.222, Y.223, K.228, R.268, D.270, F.272, N.281, E.282, N.284
- Ligands: DAL.4, DAL.5
22 PLIP interactions:22 interactions with chain B- Hydrogen bonds: B:K.153, B:G.158, B:S.159, B:S.160, B:E.189, B:E.189, B:L.192, B:E.197, B:Y.223, B:R.268, B:N.281, B:E.282, B:N.284, B:N.284
- Water bridges: B:K.116
- Salt bridges: B:K.116, B:K.116, B:K.153, B:K.228, B:K.228, B:K.228
- pi-Stacking: B:F.151
- Links
- RCSB PDBe PDBe-KB PDBj PDBsum CATH PLIP
- Citation
- Kitamura, Y. et al., Crystal structure of D-Alanine:D-Alanine Ligase with ATP and D-Alanine:D-Alanine from Thermus thermophius HB8. To be Published
- Release Date
- 2008-05-27
- Peptides
- D-alanine--D-alanine ligase: AB
- SMTL:PDB
- SMTL Chain Id:
PDB Chain Id:A
AB
B
- Coordinates
- PDB Format
- Method
- X-RAY DIFFRACTION 2.30 Å
- Oligo State
- homo-dimer
- Ligands
- 4 x DAL: D-ALANINE(Non-covalent)
- 2 x ATP: ADENOSINE-5'-TRIPHOSPHATE(Non-covalent)
- Links
- RCSB PDBe PDBe-KB PDBj PDBsum CATH PLIP
- Citation
- Kitamura, Y. et al., Crystal structure of D-Alanine:D-Alanine Ligase with ATP and D-Alanine:D-Alanine from Thermus thermophius HB8. To be Published
- Release Date
- 2008-05-27
- Peptides
- D-alanine--D-alanine ligase: AB
- SMTL:PDB
- SMTL Chain Id:
PDB Chain Id:A
AB
B