SMTL ID : 2zj6.1

Crystal structure of D337A mutant of Pseudomonas sp. MIS38 lipase

Coordinates

PDB Format

Method

X-RAY DIFFRACTION 2.25 Å

Oligo State

monomer

Ligands

9 x CA: CALCIUM ION(Non-covalent)

CA.1: 4 residues within 4Å: Chain A: E.253, D.275, D.283, N.284 5 PLIP interactions: 3 interactions with chain A, 2 Ligand-Water interactions Metal complexes: A:E.253, A:D.275, A:D.283, H2O.1, H2O.13 CA.2: 7 residues within 4Å: Chain A: S.374, S.376, D.378, G.391, R.392, A.393, D.396 5 PLIP interactions: 5 interactions with chain A Metal complexes: A:S.374, A:S.376, A:D.378, A:G.391, A:A.393 CA.3: 6 residues within 4Å: Chain A: G.383, G.385, D.387, D.400, G.402, N.405 5 PLIP interactions: 5 interactions with chain A Metal complexes: A:G.383, A:G.385, A:D.387, A:D.400, A:G.402 CA.4: 7 residues within 4Å: Chain A: R.392, A.393, G.394, D.396, G.409, A.411, N.414 5 PLIP interactions: 5 interactions with chain A Metal complexes: A:R.392, A:G.394, A:D.396, A:G.409, A:A.411 CA.5: 7 residues within 4Å: Chain A: T.494, G.496, D.498, G.511, L.512, D.513, D.516 5 PLIP interactions: 5 interactions with chain A Metal complexes: A:T.494, A:G.496, A:D.498, A:G.511, A:D.516 CA.6: 8 residues within 4Å: Chain A: L.512, D.513, G.514, D.516, G.529, G.530, A.531, D.534 5 PLIP interactions: 5 interactions with chain A Metal complexes: A:L.512, A:G.514, A:D.516, A:G.529, A:D.534 CA.7: 6 residues within 4Å: Chain A: G.521, G.523, D.525, S.538, G.540, D.543 5 PLIP interactions: 5 interactions with chain A Metal complexes: A:G.521, A:G.523, A:D.525, A:S.538, A:G.540 CA.8: 6 residues within 4Å: Chain A: G.530, A.531, G.532, D.534, F.551, D.554 5 PLIP interactions: 5 interactions with chain A Metal complexes: A:G.530, A:G.532, A:D.534, A:F.551, A:D.554 CA.9: 4 residues within 4Å: Chain A: G.541, T.560, N.562, D.563 5 PLIP interactions: 3 interactions with chain A, 2 Ligand-Water interactions Metal complexes: A:G.541, A:T.560, A:D.563, H2O.5, H2O.9

2 x ZN: ZINC ION(Non-covalent)

ZN.10: 2 residues within 4Å: Chain A: D.128, H.132 2 PLIP interactions: 2 interactions with chain A Metal complexes: A:D.128, A:H.132 ZN.11: 2 residues within 4Å: Chain A: H.517, E.537 2 PLIP interactions: 2 interactions with chain A Metal complexes: A:H.517, A:E.537

Links

RCSB   PDBe   PDBe-KB   PDBj   PDBsum   CATH   PLIP

Citation

Kuwahara, K. et al., Importance of the Ca2+-binding sites in the N-catalytic domain of a family I.3 lipase for activity and stability. Protein Eng.Des.Sel. (2008)

Release Date

2008-12-02

Peptides

Lipase: A

SMTL:PDB

SMTL Chain Id:
PDB Chain Id:

A
A

Lipase