SMTL ID : 2zku.1 (3 other biounits)

Structure of hepatitis C virus NS5B polymerase in a new crystal form

Coordinates

PDB Format

Method

X-RAY DIFFRACTION 1.95 Å

Oligo State

monomer

Ligands

2 x ACY: ACETIC ACID(Non-functional Binders)

ACY.1: 4 residues within 4Å: Chain A: L.480, H.481, R.507, W.534 3 PLIP interactions: 3 interactions with chain A Hydrophobic interactions: A:H.481 Hydrogen bonds: A:L.480 Salt bridges: A:R.507 ACY.2: 3 residues within 4Å: Chain A: T.227, R.228, C.229 4 PLIP interactions: 4 interactions with chain A Hydrogen bonds: A:T.227, A:C.229 Water bridges: A:R.54, A:F.230

5 x GOL: GLYCEROL(Non-functional Binders)

GOL.3: 8 residues within 4Å: Chain A: P.100, H.101, S.102, A.103, K.104, G.110, A.111, K.112 5 PLIP interactions: 5 interactions with chain A Hydrogen bonds: A:H.101, A:S.102, A:A.111, A:K.112 Water bridges: A:K.104 GOL.4: 3 residues within 4Å: Chain A: D.135, V.137, T.138 2 PLIP interactions: 2 interactions with chain A Hydrogen bonds: A:T.138 Water bridges: A:T.138 GOL.5: 5 residues within 4Å: Chain A: F.209, N.212, T.213, S.216, T.318 4 PLIP interactions: 4 interactions with chain A Hydrogen bonds: A:S.216 Water bridges: A:E.208, A:N.212, A:S.216 GOL.6: 7 residues within 4Å: Chain A: S.102, A.103, F.168, R.174, G.289, G.563, D.565 3 PLIP interactions: 3 interactions with chain A Hydrogen bonds: A:S.102, A:A.103, A:G.563 GOL.7: 3 residues within 4Å: Chain A: E.208, N.212, K.215 4 PLIP interactions: 4 interactions with chain A Hydrogen bonds: A:N.212, A:N.212, A:K.215 Water bridges: A:E.208

Links

RCSB   PDBe   PDBe-KB   PDBj   PDBsum   CATH   PLIP

Citation

Biswal, B.K. et al., Structure of Hepatitis C Virus Ns5B Polymerase in a New Crystal Form: Insights Into Oligomerisation and Allosteric Nucleotide Binding Site. To be Published

Release Date

2009-04-07

Peptides

Genome polyprotein: A

SMTL:PDB

SMTL Chain Id:
PDB Chain Id:

A
A

Genome polyprotein

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