SMTL ID : 2zlf.1

The Structural Basis for Peptidomimetic Inhibition of Eukaryotic Ribonucleotide Reductase

Coordinates

PDB Format

Method

X-RAY DIFFRACTION 2.59 Å

Oligo State

homo-dimer

Ligands

2 x PHE- THR- LEU- ASP- ALA- ASP- PHE: FTLDADF(Non-covalent)

PHE-THR-LEU-ASP-ALA-ASP-PHE.1: 15 residues within 4Å: Chain A: V.342, E.343, Q.386, S.691, Q.692, K.693, I.696, G.722, K.723, T.725, S.726, M.727, F.729, Y.730, K.733 16 PLIP interactions: 16 interactions with chain A Hydrophobic interactions: A:V.342, A:E.343, A:Q.692, A:K.693, A:K.693, A:I.696, A:T.725, A:M.727, A:F.729, A:F.729, A:Y.730 Hydrogen bonds: A:Q.692, A:K.693, A:S.726, A:S.726 Water bridges: A:T.725 PHE-THR-LEU-ASP-ALA-ASP-PHE.2: 15 residues within 4Å: Chain B: V.342, E.343, Q.386, S.691, Q.692, K.693, I.696, G.722, K.723, T.725, S.726, M.727, F.729, Y.730, K.733 16 PLIP interactions: 16 interactions with chain B Hydrophobic interactions: B:V.342, B:E.343, B:Q.692, B:K.693, B:K.693, B:I.696, B:T.725, B:M.727, B:F.729, B:F.729, B:Y.730 Hydrogen bonds: B:Q.692, B:K.693, B:S.726, B:S.726 Water bridges: B:T.725

Links

RCSB   PDBe   PDBe-KB   PDBj   PDBsum   CATH   PLIP

Citation

Xu, H. et al., The Structural Basis for Peptidomimetic Inhibition of Eukaryotic Ribonucleotide Reductase: A Conformationally Flexible Pharmacophore. J.Med.Chem. (2008)

Release Date

2008-08-19

Peptides

Ribonucleoside-diphosphate reductase large chain 1: AB

SMTL:PDB

SMTL Chain Id:
PDB Chain Id:

A
A

B
A

Ribonucleoside-diphosphate reductase large chain 1

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