- Coordinates
- PDB Format
- Method
- X-RAY DIFFRACTION 1.55 Å
- Oligo State
- homo-dimer
- Ligands
- 10 x SO4: SULFATE ION(Non-functional Binders)
- 8 x MES: 2-(N-MORPHOLINO)-ETHANESULFONIC ACID(Non-covalent)
MES.6: 12 residues within 4Å:- Chain A: S.112, Y.215, D.314, G.316, F.317, W.331, I.343, G.344, I.345, Y.370, H.375
- Ligands: GOL.10
5 PLIP interactions:5 interactions with chain A- Hydrogen bonds: A:S.112, A:G.344, A:I.345
- Water bridges: A:Y.215, A:Q.348
MES.7: 7 residues within 4Å:- Chain A: R.99, G.101
- Chain B: Y.13, P.30, R.33, W.34, H.38
2 PLIP interactions:1 interactions with chain B, 1 interactions with chain A- Salt bridges: B:H.38, A:R.99
MES.8: 6 residues within 4Å:- Chain A: Q.69, L.70, P.71, D.72, R.76, D.384
3 PLIP interactions:3 interactions with chain A- Hydrogen bonds: A:D.72
- Salt bridges: A:R.76, A:D.384
MES.9: 13 residues within 4Å:- Chain A: M.111, S.112, K.115, Y.166, V.177, H.180, G.181, W.186, S.217, H.266, G.267, I.345
- Ligands: GOL.10
4 PLIP interactions:4 interactions with chain A- Hydrogen bonds: A:S.217
- Water bridges: A:S.112
- Salt bridges: A:K.115, A:H.266
MES.19: 12 residues within 4Å:- Chain B: S.112, Y.215, D.314, G.316, F.317, W.331, I.343, G.344, I.345, Y.370, H.375
- Ligands: GOL.23
6 PLIP interactions:6 interactions with chain B- Hydrogen bonds: B:S.112, B:Y.215, B:G.344, B:I.345
- Water bridges: B:Q.348, B:H.375
MES.20: 7 residues within 4Å:- Chain A: Y.13, P.30, R.33, W.34, H.38
- Chain B: R.99, G.101
2 PLIP interactions:1 interactions with chain A, 1 interactions with chain B- Salt bridges: A:H.38, B:R.99
MES.21: 6 residues within 4Å:- Chain B: Q.69, L.70, P.71, D.72, R.76, D.384
4 PLIP interactions:4 interactions with chain B- Hydrogen bonds: B:D.72
- Water bridges: B:D.384
- Salt bridges: B:R.76, B:D.384
MES.22: 13 residues within 4Å:- Chain B: M.111, S.112, K.115, Y.166, V.177, H.180, G.181, W.186, S.217, H.266, G.267, I.345
- Ligands: GOL.23
4 PLIP interactions:4 interactions with chain B- Hydrogen bonds: B:S.217
- Water bridges: B:S.112
- Salt bridges: B:K.115, B:H.266
- 8 x GOL: GLYCEROL(Non-functional Binders)
GOL.10: 9 residues within 4Å:- Chain A: Y.166, E.168, V.177, Y.215, C.216, S.217, I.345
- Ligands: MES.6, MES.9
4 PLIP interactions:4 interactions with chain A- Hydrogen bonds: A:Y.215, A:S.217
- Water bridges: A:S.112, A:E.168
GOL.11: 8 residues within 4Å:- Chain A: L.155, D.159, Q.161, G.306, G.307, S.308, T.327, R.328
8 PLIP interactions:8 interactions with chain A- Hydrogen bonds: A:D.159, A:Q.161, A:S.308, A:T.327, A:R.328, A:R.328
- Water bridges: A:Q.161, A:R.302
GOL.12: 4 residues within 4Å:- Chain A: N.335, E.336, R.337, R.387
6 PLIP interactions:6 interactions with chain A- Hydrogen bonds: A:N.335, A:E.336, A:E.336, A:R.387
- Water bridges: A:E.336, A:R.337
GOL.13: 6 residues within 4Å:- Chain A: E.96, Y.98, P.104, D.105, D.250, R.274
3 PLIP interactions:3 interactions with chain A- Hydrogen bonds: A:E.96, A:D.250, A:D.250
GOL.23: 9 residues within 4Å:- Chain B: Y.166, E.168, V.177, Y.215, C.216, S.217, I.345
- Ligands: MES.19, MES.22
3 PLIP interactions:3 interactions with chain B- Hydrogen bonds: B:Y.215, B:S.217
- Water bridges: B:S.112
GOL.24: 8 residues within 4Å:- Chain B: L.155, D.159, Q.161, G.306, G.307, S.308, T.327, R.328
8 PLIP interactions:8 interactions with chain B- Hydrogen bonds: B:D.159, B:Q.161, B:S.308, B:T.327, B:R.328, B:R.328
- Water bridges: B:Q.161, B:R.302
GOL.25: 4 residues within 4Å:- Chain B: N.335, E.336, R.337, R.387
5 PLIP interactions:5 interactions with chain B- Hydrogen bonds: B:N.335, B:E.336, B:R.387
- Water bridges: B:E.336, B:R.337
GOL.26: 6 residues within 4Å:- Chain B: E.96, Y.98, P.104, D.105, D.250, R.274
3 PLIP interactions:3 interactions with chain B- Hydrogen bonds: B:E.96, B:Y.98, B:D.250
- Links
- RCSB PDBe PDBe-KB PDBj PDBsum CATH PLIP
- Citation
- Ohki, T. et al., Two alternative modes for optimizing nylon-6 byproduct hydrolytic activity from a carboxylesterase with a beta-lactamase fold: X-ray crystallographic analysis of directly evolved 6-aminohexanoate-dimer hydrolase. Protein Sci. (2009)
- Release Date
- 2009-04-21
- Peptides
- 6-aminohexanoate-dimer hydrolase: AB
- SMTL:PDB
- SMTL Chain Id:
PDB Chain Id:A
AB
A
- Coordinates
- PDB Format
- Method
- X-RAY DIFFRACTION 1.55 Å
- Oligo State
- homo-dimer
- Ligands
- 10 x SO4: SULFATE ION(Non-functional Binders)
- 8 x MES: 2-(N-MORPHOLINO)-ETHANESULFONIC ACID(Non-covalent)
- 8 x GOL: GLYCEROL(Non-functional Binders)
- Links
- RCSB PDBe PDBe-KB PDBj PDBsum CATH PLIP
- Citation
- Ohki, T. et al., Two alternative modes for optimizing nylon-6 byproduct hydrolytic activity from a carboxylesterase with a beta-lactamase fold: X-ray crystallographic analysis of directly evolved 6-aminohexanoate-dimer hydrolase. Protein Sci. (2009)
- Release Date
- 2009-04-21
- Peptides
- 6-aminohexanoate-dimer hydrolase: AB
- SMTL:PDB
- SMTL Chain Id:
PDB Chain Id:A
AB
A