- Coordinates
- PDB Format
- Method
- X-RAY DIFFRACTION 1.60 Å
- Oligo State
- homo-dimer
- Ligands
- 8 x SO4: SULFATE ION(Non-functional Binders)
- 4 x ACA: 6-AMINOHEXANOIC ACID(Non-covalent)
ACA.5: 9 residues within 4Å:- Chain A: A.112, Y.170, Y.215, F.317, W.331, I.343, I.345, H.375
- Ligands: ACA.6
5 PLIP interactions:5 interactions with chain A- Hydrophobic interactions: A:W.331
- Hydrogen bonds: A:Y.170, A:I.345
- Water bridges: A:D.370
- Salt bridges: A:H.375
ACA.6: 11 residues within 4Å:- Chain A: M.111, A.112, Y.170, D.181, W.186, Y.215, F.264, H.266, G.344, I.345
- Ligands: ACA.5
8 PLIP interactions:7 interactions with chain A, 1 interactions with chain B- Hydrophobic interactions: A:A.112, A:Y.170, A:I.345
- Hydrogen bonds: A:A.112, A:H.266, A:I.345
- Water bridges: A:S.217, B:Q.27
ACA.16: 9 residues within 4Å:- Chain B: A.112, Y.170, Y.215, F.317, W.331, I.343, I.345, H.375
- Ligands: ACA.17
7 PLIP interactions:7 interactions with chain B- Hydrophobic interactions: B:W.331
- Hydrogen bonds: B:Y.170, B:Y.215, B:I.345
- Water bridges: B:D.370, B:H.375
- Salt bridges: B:H.375
ACA.17: 11 residues within 4Å:- Chain B: M.111, A.112, Y.170, D.181, W.186, Y.215, F.264, H.266, G.344, I.345
- Ligands: ACA.16
8 PLIP interactions:7 interactions with chain B, 1 interactions with chain A- Hydrophobic interactions: B:A.112, B:Y.170, B:I.345
- Hydrogen bonds: B:A.112, B:H.266, B:I.345
- Water bridges: B:S.217, A:Q.27
- 4 x MES: 2-(N-MORPHOLINO)-ETHANESULFONIC ACID(Non-covalent)
MES.7: 7 residues within 4Å:- Chain A: R.99, G.101
- Chain B: Y.13, P.30, R.33, W.34, H.38
4 PLIP interactions:1 interactions with chain B, 3 interactions with chain A- Salt bridges: B:H.38, A:R.99
- Water bridges: A:R.99, A:R.99
MES.8: 6 residues within 4Å:- Chain A: Q.69, L.70, P.71, D.72, R.76, D.384
4 PLIP interactions:4 interactions with chain A- Hydrogen bonds: A:D.72
- Water bridges: A:R.387
- Salt bridges: A:R.76, A:D.384
MES.18: 7 residues within 4Å:- Chain A: Y.13, P.30, R.33, W.34, H.38
- Chain B: R.99, G.101
4 PLIP interactions:3 interactions with chain B, 1 interactions with chain A- Water bridges: B:R.99, B:R.99
- Salt bridges: B:R.99, A:H.38
MES.19: 6 residues within 4Å:- Chain B: Q.69, L.70, P.71, D.72, R.76, D.384
4 PLIP interactions:4 interactions with chain B- Hydrogen bonds: B:D.72
- Water bridges: B:R.387
- Salt bridges: B:R.76, B:D.384
- 6 x GOL: GLYCEROL(Non-functional Binders)
GOL.9: 6 residues within 4Å:- Chain A: L.155, D.159, R.302, G.306, T.327, R.328
6 PLIP interactions:6 interactions with chain A- Hydrogen bonds: A:D.159, A:R.302, A:G.306, A:T.327, A:R.328, A:R.328
GOL.10: 4 residues within 4Å:- Chain A: G.211, E.212, E.310, A.311
1 PLIP interactions:1 interactions with chain A- Hydrogen bonds: A:E.310
GOL.11: 4 residues within 4Å:- Chain A: D.106, R.107, R.251
- Chain B: A.37
6 PLIP interactions:6 interactions with chain A- Hydrogen bonds: A:R.107, A:R.107, A:R.107, A:R.251, A:R.251
- Water bridges: A:R.107
GOL.20: 6 residues within 4Å:- Chain B: L.155, D.159, R.302, G.306, T.327, R.328
6 PLIP interactions:6 interactions with chain B- Hydrogen bonds: B:D.159, B:R.302, B:G.306, B:T.327, B:R.328, B:R.328
GOL.21: 4 residues within 4Å:- Chain B: G.211, E.212, E.310, A.311
1 PLIP interactions:1 interactions with chain B- Hydrogen bonds: B:E.310
GOL.22: 4 residues within 4Å:- Chain A: A.37
- Chain B: D.106, R.107, R.251
8 PLIP interactions:7 interactions with chain B, 1 interactions with chain A- Hydrogen bonds: B:D.106, B:R.107, B:R.107, B:R.107, B:R.251, B:R.251
- Water bridges: B:R.107, A:D.252
- Links
- RCSB PDBe PDBe-KB PDBj PDBsum CATH PLIP
- Citation
- Kawashima, Y. et al., Molecular design of a nylon-6 byproduct-degrading enzyme from a carboxylesterase with a beta-lactamase fold. Febs J. (2009)
- Release Date
- 2009-04-07
- Peptides
- 6-aminohexanoate-dimer hydrolase: AB
- SMTL:PDB
- SMTL Chain Id:
PDB Chain Id:A
AB
A
- Coordinates
- PDB Format
- Method
- X-RAY DIFFRACTION 1.60 Å
- Oligo State
- homo-dimer
- Ligands
- 8 x SO4: SULFATE ION(Non-functional Binders)
- 4 x ACA: 6-AMINOHEXANOIC ACID(Non-covalent)
- 4 x MES: 2-(N-MORPHOLINO)-ETHANESULFONIC ACID(Non-covalent)
- 6 x GOL: GLYCEROL(Non-functional Binders)
- Links
- RCSB PDBe PDBe-KB PDBj PDBsum CATH PLIP
- Citation
- Kawashima, Y. et al., Molecular design of a nylon-6 byproduct-degrading enzyme from a carboxylesterase with a beta-lactamase fold. Febs J. (2009)
- Release Date
- 2009-04-07
- Peptides
- 6-aminohexanoate-dimer hydrolase: AB
- SMTL:PDB
- SMTL Chain Id:
PDB Chain Id:A
AB
A