SMTL ID : 2znq.2 (2 other biounits)

Human PPAR delta ligand binding domain in complex with a synthetic agonist TIPP401

Coordinates

PDB Format

Method

X-RAY DIFFRACTION 2.65 Å

Oligo State

monomer

Ligands

1 x B7G: heptyl beta-D-glucopyranoside(Non-covalent)

B7G.1: 9 residues within 4Å: Chain A: V.92, T.96, V.114, L.117, K.118, L.267, E.270, K.273, D.274 8 PLIP interactions: 8 interactions with chain A Hydrophobic interactions: A:V.92, A:V.114, A:L.117, A:L.267 Hydrogen bonds: A:E.270, A:K.273 Salt bridges: A:K.118, A:K.273

1 x 401: (2S)-2-{3-[({[2-fluoro-4-(trifluoromethyl)phenyl]carbonyl}amino)methyl]-4-methoxybenzyl}butanoic acid(Non-covalent)

401.2: 19 residues within 4Å: Chain A: W.63, V.80, F.81, R.83, C.84, Q.85, T.87, T.88, H.122, L.129, L.138, V.140, V.147, I.162, K.166, H.248, M.252, L.268, Y.272 9 PLIP interactions: 9 interactions with chain A Hydrophobic interactions: A:V.80, A:F.81, A:R.83, A:V.140, A:K.166 Hydrogen bonds: A:T.87, A:T.88 Salt bridges: A:H.122, A:H.248

Links

RCSB   PDBe   PDBe-KB   PDBj   PDBsum   CATH   PLIP

Citation

Oyama, T. et al., Adaptability and selectivity of human peroxisome proliferator-activated receptor (PPAR) pan agonists revealed from crystal structures. Acta Crystallogr.,Sect.D (2009)

Release Date

2009-05-05

Peptides

Peroxisome proliferator-activated receptor delta: A

SMTL:PDB

SMTL Chain Id:
PDB Chain Id:

A
A

Peroxisome proliferator-activated receptor delta

Related Entries With Identical Sequence