SMTL ID : 2zvt.1 (1 other biounit)

Cys285Ser mutant PPARgamma ligand-binding domain complexed with 15-deoxy-delta12,14-prostaglandin J2

Coordinates

PDB Format

Method

X-RAY DIFFRACTION 1.90 Å

Oligo State

homo-dimer

Ligands

2 x PTG: (5E,14E)-11-oxoprosta-5,9,12,14-tetraen-1-oic acid(Non-covalent)

PTG.1: 15 residues within 4Å: Chain A: I.91, F.92, Q.96, R.98, S.99, H.133, I.136, Y.137, L.140, I.151, M.174, H.259, L.263, L.279, Y.283 8 PLIP interactions: 8 interactions with chain A Hydrophobic interactions: A:I.136, A:Y.137, A:L.140, A:L.140, A:L.279 Hydrogen bonds: A:Y.283 Water bridges: A:R.98 Salt bridges: A:H.259 PTG.2: 15 residues within 4Å: Chain B: I.77, I.91, G.94, S.95, R.98, A.102, I.136, L.140, I.151, S.152, E.153, M.158, L.163, F.173, M.174 18 PLIP interactions: 18 interactions with chain B Hydrophobic interactions: B:I.77, B:I.91, B:R.98, B:A.102, B:I.136, B:L.140, B:L.140, B:I.151, B:I.151, B:L.163 Hydrogen bonds: B:S.152, B:E.153 Water bridges: B:R.98, B:R.98, B:L.150, B:L.150, B:G.154 Salt bridges: B:R.98

Links

RCSB   PDBe   PDBe-KB   PDBj   PDBsum   CATH   PLIP

Citation

Waku, T. et al., Atomic structure of mutant PPARgamma LBD complexed with 15d-PGJ2: novel modulation mechanism of PPARgamma/RXRalpha function by covalently bound ligands. Febs Lett. (2009)

Release Date

2009-10-06

Peptides

Peroxisome proliferator-activated receptor gamma: AB

SMTL:PDB

SMTL Chain Id:
PDB Chain Id:

A
A

B
B

Peroxisome proliferator-activated receptor gamma

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