SMTL ID : 2zx6.1

alpha-L-fucosidase complexed with inhibitor, F10-1C

Coordinates

PDB Format

Method

X-RAY DIFFRACTION 2.42 Å

Oligo State

homo-hexamer

Ligands

6 x ZX6: 2-(1H-indol-3-yl)-N-{[(2R,3R,4R,5R,6S)-3,4,5-trihydroxy-6-methylpiperidin-2-yl]methyl}acetamide(Non-covalent)

ZX6.1: 14 residues within 4Å: Chain A: F.32, H.34, L.50, Y.64, E.66, W.67, H.128, H.129, Y.171, D.224, M.225, R.254, E.266, F.290 12 PLIP interactions: 12 interactions with chain A Hydrophobic interactions: A:F.32, A:R.254, A:F.290 Hydrogen bonds: A:H.34, A:E.66, A:E.66, A:D.224, A:D.224, A:R.254 Water bridges: A:D.253, A:N.270 pi-Cation interactions: A:R.254 ZX6.2: 13 residues within 4Å: Chain B: F.32, H.34, Y.64, E.66, W.67, H.128, H.129, Y.171, D.224, M.225, R.254, E.266, F.290 11 PLIP interactions: 11 interactions with chain B Hydrophobic interactions: B:F.32, B:R.254, B:F.290 Hydrogen bonds: B:H.34, B:E.66, B:Y.171, B:D.224, B:D.224, B:D.224, B:R.254 pi-Cation interactions: B:R.254 ZX6.3: 14 residues within 4Å: Chain C: F.32, H.34, L.50, Y.64, E.66, W.67, H.128, H.129, Y.171, D.224, M.225, R.254, E.266, F.290 12 PLIP interactions: 12 interactions with chain C Hydrophobic interactions: C:F.32, C:R.254, C:F.290 Hydrogen bonds: C:H.34, C:E.66, C:E.66, C:D.224, C:D.224, C:R.254 Water bridges: C:D.253, C:N.270 pi-Cation interactions: C:R.254 ZX6.4: 13 residues within 4Å: Chain D: F.32, H.34, Y.64, E.66, W.67, H.128, H.129, Y.171, D.224, M.225, R.254, E.266, F.290 11 PLIP interactions: 11 interactions with chain D Hydrophobic interactions: D:F.32, D:R.254, D:F.290 Hydrogen bonds: D:H.34, D:E.66, D:Y.171, D:D.224, D:D.224, D:D.224, D:R.254 pi-Cation interactions: D:R.254 ZX6.5: 14 residues within 4Å: Chain E: F.32, H.34, L.50, Y.64, E.66, W.67, H.128, H.129, Y.171, D.224, M.225, R.254, E.266, F.290 12 PLIP interactions: 12 interactions with chain E Hydrophobic interactions: E:F.32, E:R.254, E:F.290 Hydrogen bonds: E:H.34, E:E.66, E:E.66, E:D.224, E:D.224, E:R.254 Water bridges: E:D.253, E:N.270 pi-Cation interactions: E:R.254 ZX6.6: 13 residues within 4Å: Chain F: F.32, H.34, Y.64, E.66, W.67, H.128, H.129, Y.171, D.224, M.225, R.254, E.266, F.290 11 PLIP interactions: 11 interactions with chain F Hydrophobic interactions: F:F.32, F:R.254, F:F.290 Hydrogen bonds: F:H.34, F:E.66, F:Y.171, F:D.224, F:D.224, F:D.224, F:R.254 pi-Cation interactions: F:R.254

Links

RCSB   PDBe   PDBe-KB   PDBj   PDBsum   CATH   PLIP

Citation

Wu, H.J. et al., Structural basis of alpha-fucosidase inhibition by iminocyclitols with K(i) values in the micro- to picomolar range. Angew.Chem.Int.Ed.Engl. (2010)

Release Date

2009-12-08

Peptides

Alpha-L-fucosidase, putative: ABCDEF

SMTL:PDB

SMTL Chain Id:
PDB Chain Id:

A
A

B
B

C
A

D
B

E
A

F
B

Alpha-L-fucosidase, putative

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