SMTL ID : 2zxm.2 (1 other biounit)

A New Class of Vitamin D Receptor Ligands that Induce Structural Rearrangement of the Ligand-binding Pocket

Coordinates

PDB Format

Method

X-RAY DIFFRACTION 3.01 Å

Oligo State

hetero-1-1-mer

Ligands

1 x JB1: (1R,3S,5Z)-5-[(2E)-2-[(1R,3aS,7aR)-1-[(2R,3S)-3-(2-hydroxyethyl)heptan-2-yl]-7a-methyl-2,3,3a,5,6,7-hexahydro-1H-inden-4-ylidene]ethylidene]-4-methylidene-cyclohexane-1,3-diol(Non-covalent)

JB1.1: 21 residues within 4Å: Chain A: Y.38, Y.42, F.45, L.74, L.77, V.78, S.81, I.112, I.115, M.116, R.118, S.119, S.122, W.130, C.132, Y.139, V.144, H.149, L.153, L.157, H.241 19 PLIP interactions: 19 interactions with chain A Hydrophobic interactions: A:Y.38, A:F.45, A:L.74, A:L.77, A:V.78, A:I.112, A:I.115, A:W.130, A:W.130, A:Y.139, A:V.144, A:V.144, A:L.153, A:L.153, A:L.157 Hydrogen bonds: A:R.118, A:R.118, A:S.122, A:S.122

Links

RCSB   PDBe   PDBe-KB   PDBj   PDBsum   CATH   PLIP

Citation

Inaba, Y. et al., A New Class of Vitamin D Analogues that Induce Structural Rearrangement of the Ligand-Binding Pocket of the Receptor. J.Med.Chem. (2009)

Release Date

2009-02-17

Peptides

Vitamin D3 receptor: A
Mediator of RNA polymerase II transcription subunit 1: B

SMTL:PDB

SMTL Chain Id:
PDB Chain Id:

A
A

B
C

Vitamin D3 receptor

Mediator of RNA polymerase II transcription subunit 1

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