SMTL ID : 2zzg.1 (1 other biounit)

Crystal structure of alanyl-tRNA synthetase in complex with 5''-O-(N-(L-alanyl)-sulfamyoxyl) adenine without oligomerization domain

Coordinates

PDB Format

Method

X-RAY DIFFRACTION 3.10 Å

Oligo State

monomer

Ligands

2 x ZN: ZINC ION(Non-covalent)

ZN.1: 4 residues within 4Å: Chain A: C.20, C.23, C.37, C.42 4 PLIP interactions: 4 interactions with chain A Metal complexes: A:C.20, A:C.23, A:C.37, A:C.42 ZN.2: 4 residues within 4Å: Chain A: H.613, H.617, C.717, H.721 4 PLIP interactions: 3 interactions with chain A, 1 Ligand-Water interactions Metal complexes: A:H.613, A:H.617, A:C.717, H2O.1

1 x A5A: '5'-O-(N-(L-ALANYL)-SULFAMOYL)ADENOSINE(Non-covalent)

A5A.3: 18 residues within 4Å: Chain A: A.99, R.128, R.140, H.141, F.142, F.145, M.147, W.192, E.210, V.211, A.212, T.213, V.215, D.248, T.249, G.250, G.252, R.255 18 PLIP interactions: 18 interactions with chain A Hydrophobic interactions: A:V.215 Hydrogen bonds: A:R.128, A:R.128, A:D.131, A:F.142, A:E.210, A:E.210, A:T.213, A:T.213, A:T.213, A:D.248, A:G.252, A:R.255 Salt bridges: A:R.128 pi-Stacking: A:F.145, A:F.145 pi-Cation interactions: A:R.255, A:R.255

Links

RCSB   PDBe   PDBe-KB   PDBj   PDBsum   CATH   PLIP

Citation

Sokabe, M. et al., The structure of alanyl-tRNA synthetase with editing domain. Proc.Natl.Acad.Sci.USA (2009)

Release Date

2009-07-21

Peptides

Alanyl-tRNA synthetase: A

SMTL:PDB

SMTL Chain Id:
PDB Chain Id:

A
A

Alanyl-tRNA synthetase

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