SMTL ID : 2zzr.1

Crystal structure of unsaturated glucuronyl hydrolase from Streptcoccus agalactiae

Coordinates

PDB Format

Method

X-RAY DIFFRACTION 1.75 Å

Oligo State

monomer

Ligands

3 x SO4: SULFATE ION(Non-functional Binders)

SO4.1: 3 residues within 4Å: Chain A: R.211, D.212, F.217 6 PLIP interactions: 6 interactions with chain A Hydrogen bonds: A:D.212 Water bridges: A:K.4, A:V.210, A:D.213 Salt bridges: A:K.4, A:R.211 SO4.2: 6 residues within 4Å: Chain A: Y.289, D.296, G.297, S.298, G.299, Q.300 8 PLIP interactions: 8 interactions with chain A Hydrogen bonds: A:Y.289, A:G.297, A:S.298, A:G.299, A:Q.300 Water bridges: A:Y.289, A:R.302, A:R.302 SO4.3: 5 residues within 4Å: Chain A: N.13, R.16, P.283, E.284, K.286 4 PLIP interactions: 4 interactions with chain A Hydrogen bonds: A:N.13 Water bridges: A:R.16 Salt bridges: A:R.16, A:K.286

3 x GOL: GLYCEROL(Non-functional Binders)

GOL.4: 5 residues within 4Å: Chain A: K.166, E.167, Y.221, L.230, K.231 6 PLIP interactions: 6 interactions with chain A Hydrogen bonds: A:K.166, A:K.166 Water bridges: A:E.167, A:Y.221, A:K.231, A:K.231 GOL.5: 3 residues within 4Å: Chain A: E.9, E.12, R.281 6 PLIP interactions: 6 interactions with chain A Hydrogen bonds: A:E.9, A:E.12 Water bridges: A:E.12, A:R.281, A:R.281, A:R.281 GOL.6: 2 residues within 4Å: Chain A: Y.265, V.324 No protein-ligand interaction detected (PLIP)

Links

RCSB   PDBe   PDBe-KB   PDBj   PDBsum   CATH   PLIP

Citation

Maruyama, Y. et al., Substrate specificity of streptococcal unsaturated glucuronyl hydrolases for sulfated glycosaminoglycan. J.Biol.Chem. (2009)

Release Date

2009-04-14

Peptides

Unsaturated glucuronyl hydrolase: A

SMTL:PDB

SMTL Chain Id:
PDB Chain Id:

A
A

Unsaturated glucuronyl hydrolase