SMTL ID : 3a2i.1

Crystal structure of the human vitamin D receptor (H305F) ligand binding domain complexed with TEI-9647

Coordinates

PDB Format

Method

X-RAY DIFFRACTION 3.27 Å

Oligo State

monomer

Ligands

1 x TEJ: (1S,3R,5Z,7E,20S,23S)-1,3-dihydroxy-23,26-epoxy-9,10-secocholesta-5,7,10,25(27)-tetraen-26-one(Non-covalent)

TEJ.1: 19 residues within 4Å: Chain A: Y.30, F.37, L.63, A.67, L.69, V.70, S.73, I.107, M.108, R.110, S.111, S.114, W.122, C.124, V.136, F.141, L.149, H.233, F.258 15 PLIP interactions: 15 interactions with chain A Hydrophobic interactions: A:Y.30, A:F.37, A:L.63, A:L.69, A:V.70, A:W.122, A:V.136, A:V.136, A:F.141, A:L.149 Hydrogen bonds: A:R.110, A:R.110, A:S.114, A:S.114 Salt bridges: A:H.233

Links

RCSB   PDBe   PDBe-KB   PDBj   PDBsum   CATH   PLIP

Citation

Kakuda, S. et al., Structural basis of the histidine-mediated vitamin D receptor agonistic and antagonistic mechanisms of (23S)-25-dehydro-1alpha-hydroxyvitamin D(3)-26,23-lactone. Acta Crystallogr.,Sect.D (2010)

Release Date

2010-05-26

Peptides

Vitamin D3 receptor: A

SMTL:PDB

SMTL Chain Id:
PDB Chain Id:

A
A

Vitamin D3 receptor