SMTL ID : 3a2s.1

Crystal Structure of outer membrane protein PorB from Neisseria meningitidis in complex with sucrose

Coordinates

PDB Format

Method

X-RAY DIFFRACTION 2.20 Å

Oligo State

homo-trimer

Ligands

3 x GLC- FRU: beta-D-fructofuranose-(2-1)-alpha-D-glucopyranose(Post Translational Modification)

GLC-FRU.1: 7 residues within 4Å: Chain A: T.21, K.23, K.56, A.122, E.124, R.352, K.354 5 PLIP interactions: 5 interactions with chain A Hydrogen bonds: A:K.23, A:E.124, A:R.352, A:R.352, A:K.354, A:T.21, A:T.21, A:K.23, A:K.23, A:K.56 GLC-FRU.3: 7 residues within 4Å: Chain B: T.21, K.23, K.56, A.122, E.124, R.352, K.354 5 PLIP interactions: 5 interactions with chain B Hydrogen bonds: B:K.23, B:E.124, B:R.352, B:R.352, B:K.354, B:T.21, B:T.21, B:K.23, B:K.23, B:K.56 GLC-FRU.5: 7 residues within 4Å: Chain C: T.21, K.23, K.56, A.122, E.124, R.352, K.354 5 PLIP interactions: 5 interactions with chain C Hydrogen bonds: C:K.23, C:E.124, C:R.352, C:R.352, C:K.354, C:T.21, C:T.21, C:K.23, C:K.23, C:K.56

3 x LDA: LAURYL DIMETHYLAMINE-N-OXIDE(Non-covalent)

LDA.2: 6 residues within 4Å: Chain A: K.114, S.143, R.144, E.145, R.217, V.218 2 PLIP interactions: 2 interactions with chain A Hydrophobic interactions: A:K.114, A:R.144 LDA.4: 6 residues within 4Å: Chain B: K.114, S.143, R.144, E.145, R.217, V.218 2 PLIP interactions: 2 interactions with chain B Hydrophobic interactions: B:K.114, B:R.144 LDA.6: 6 residues within 4Å: Chain C: K.114, S.143, R.144, E.145, R.217, V.218 2 PLIP interactions: 2 interactions with chain C Hydrophobic interactions: C:K.114, C:R.144

Links

RCSB   PDBe   PDBe-KB   PDBj   PDBsum   CATH   PLIP

Citation

Tanabe, M. et al., Structural basis for solute transport, nucleotide regulation, and immunological recognition of Neisseria meningitidis PorB. Proc.Natl.Acad.Sci.USA (2010)

Release Date

2010-04-07

Peptides

Outer membrane protein II: ABC

SMTL:PDB

SMTL Chain Id:
PDB Chain Id:

A
X

B
X

C
X

Membrane

We predict this structure to be a membrane protein.
Show / Hide

Outer membrane protein II

Related Entries With Identical Sequence