- Coordinates
- PDB Format
- Method
- X-RAY DIFFRACTION 1.60 Å
- Oligo State
- homo-dimer
- Ligands
- 4 x NA: SODIUM ION(Non-functional Binders)
- 14 x GOL: GLYCEROL(Non-functional Binders)
GOL.3: 7 residues within 4Å:- Chain A: D.159, Q.161, G.306, G.307, S.308, T.327, R.328
7 PLIP interactions:7 interactions with chain A- Hydrogen bonds: A:D.159, A:Q.161, A:R.302, A:S.308, A:T.327, A:R.328, A:R.328
GOL.4: 6 residues within 4Å:- Chain A: R.107, D.250, R.251, D.252
- Chain B: R.251
- Ligands: GOL.16
10 PLIP interactions:4 interactions with chain B, 6 interactions with chain A- Hydrogen bonds: B:R.251, A:R.107, A:R.107, A:R.251, A:D.252, A:D.252
- Water bridges: B:R.107, B:R.107, B:R.107, A:D.252
GOL.5: 5 residues within 4Å:- Chain A: D.106, R.107, R.251
- Chain B: A.37, D.252
7 PLIP interactions:5 interactions with chain A, 2 interactions with chain B- Hydrogen bonds: A:R.107, A:R.107, A:R.107, A:R.251, A:R.251, B:A.37, B:D.252
GOL.6: 3 residues within 4Å:- Chain A: P.367, D.368
- Chain B: P.29
3 PLIP interactions:3 interactions with chain A- Hydrogen bonds: A:D.368
- Water bridges: A:P.367, A:D.368
GOL.7: 10 residues within 4Å:- Chain A: A.112, Y.215, W.331, I.343, G.344, I.345, Y.370
- Ligands: NA.2, GOL.8, ACA.12
2 PLIP interactions:2 interactions with chain A- Hydrogen bonds: A:I.343
- Water bridges: A:Y.215
GOL.8: 9 residues within 4Å:- Chain A: D.314, G.316, F.317, W.331, I.343, Y.370, H.375
- Ligands: NA.2, GOL.7
3 PLIP interactions:3 interactions with chain A- Hydrogen bonds: A:G.316
- Water bridges: A:G.316, A:H.375
GOL.9: 4 residues within 4Å:- Chain A: V.177, I.345, P.369
- Ligands: ACA.12
1 PLIP interactions:1 interactions with chain A- Water bridges: A:D.181
GOL.15: 7 residues within 4Å:- Chain B: D.159, Q.161, G.306, G.307, S.308, T.327, R.328
7 PLIP interactions:7 interactions with chain B- Hydrogen bonds: B:D.159, B:Q.161, B:R.302, B:S.308, B:T.327, B:R.328, B:R.328
GOL.16: 6 residues within 4Å:- Chain A: R.251
- Chain B: R.107, D.250, R.251, D.252
- Ligands: GOL.4
9 PLIP interactions:4 interactions with chain A, 5 interactions with chain B- Hydrogen bonds: A:R.251, B:R.107, B:R.107, B:R.251, B:D.252, B:D.252
- Water bridges: A:R.107, A:R.107, A:R.107
GOL.17: 5 residues within 4Å:- Chain A: A.37, D.252
- Chain B: D.106, R.107, R.251
9 PLIP interactions:3 interactions with chain A, 6 interactions with chain B- Hydrogen bonds: A:A.37, A:D.252, A:D.252, B:D.106, B:R.107, B:R.107, B:R.107, B:R.251, B:R.251
GOL.18: 3 residues within 4Å:- Chain A: P.29
- Chain B: P.367, D.368
4 PLIP interactions:4 interactions with chain B- Hydrogen bonds: B:D.368
- Water bridges: B:P.367, B:D.368, B:D.368
GOL.19: 10 residues within 4Å:- Chain B: A.112, Y.215, W.331, I.343, G.344, I.345, Y.370
- Ligands: NA.14, GOL.20, ACA.24
1 PLIP interactions:1 interactions with chain B- Hydrogen bonds: B:I.343
GOL.20: 9 residues within 4Å:- Chain B: D.314, G.316, F.317, W.331, I.343, Y.370, H.375
- Ligands: NA.14, GOL.19
3 PLIP interactions:3 interactions with chain B- Hydrogen bonds: B:G.316
- Water bridges: B:G.316, B:H.375
GOL.21: 4 residues within 4Å:- Chain B: V.177, I.345, P.369
- Ligands: ACA.24
1 PLIP interactions:1 interactions with chain B- Water bridges: B:D.181
- 4 x MES: 2-(N-MORPHOLINO)-ETHANESULFONIC ACID(Non-covalent)
MES.10: 7 residues within 4Å:- Chain A: Y.13, P.30, R.33, W.34, H.38
- Chain B: R.99, G.101
4 PLIP interactions:3 interactions with chain B, 1 interactions with chain A- Water bridges: B:R.99, B:R.99
- Salt bridges: B:R.99, A:H.38
MES.11: 6 residues within 4Å:- Chain A: Q.69, L.70, P.71, D.72, R.76, D.384
3 PLIP interactions:3 interactions with chain A- Hydrogen bonds: A:D.72
- Salt bridges: A:R.76, A:D.384
MES.22: 7 residues within 4Å:- Chain A: R.99, G.101
- Chain B: Y.13, P.30, R.33, W.34, H.38
4 PLIP interactions:3 interactions with chain A, 1 interactions with chain B- Water bridges: A:R.99, A:R.99
- Salt bridges: A:R.99, B:H.38
MES.23: 6 residues within 4Å:- Chain B: Q.69, L.70, P.71, D.72, R.76, D.384
5 PLIP interactions:5 interactions with chain B- Hydrogen bonds: B:D.72, B:D.72
- Water bridges: B:D.384
- Salt bridges: B:R.76, B:D.384
- 2 x ACA: 6-AMINOHEXANOIC ACID(Non-covalent)
ACA.12: 12 residues within 4Å:- Chain A: M.111, A.112, K.115, D.181, W.186, Y.215, S.217, N.266, G.344, I.345
- Ligands: GOL.7, GOL.9
8 PLIP interactions:8 interactions with chain A- Hydrophobic interactions: A:A.112, A:W.186, A:I.345
- Hydrogen bonds: A:A.112, A:D.181, A:I.345
- Water bridges: A:S.217
- Salt bridges: A:K.115
ACA.24: 12 residues within 4Å:- Chain B: M.111, A.112, K.115, D.181, W.186, Y.215, S.217, N.266, G.344, I.345
- Ligands: GOL.19, GOL.21
9 PLIP interactions:9 interactions with chain B- Hydrophobic interactions: B:A.112, B:W.186, B:I.345
- Hydrogen bonds: B:A.112, B:D.181, B:Y.215, B:I.345
- Water bridges: B:S.217
- Salt bridges: B:K.115
- Links
- RCSB PDBe PDBe-KB PDBj PDBsum CATH PLIP
- Citation
- Kawashima, Y. et al., Enzymatic Synthesis of Nylon-6 Units in Organic Sol Contained Low-Water: Structural Requirement of 6-Aminohexanoate-Dimer Hydrolase for Efficient Amid Synthesis. To be Published
- Release Date
- 2010-09-01
- Peptides
- 6-AMINOHEXANOATE-DIMER HYDROLASE: AB
- SMTL:PDB
- SMTL Chain Id:
PDB Chain Id:A
AB
A
- Coordinates
- PDB Format
- Method
- X-RAY DIFFRACTION 1.60 Å
- Oligo State
- homo-dimer
- Ligands
- 4 x NA: SODIUM ION(Non-functional Binders)
- 14 x GOL: GLYCEROL(Non-functional Binders)
- 4 x MES: 2-(N-MORPHOLINO)-ETHANESULFONIC ACID(Non-covalent)
- 2 x ACA: 6-AMINOHEXANOIC ACID(Non-covalent)
- Links
- RCSB PDBe PDBe-KB PDBj PDBsum CATH PLIP
- Citation
- Kawashima, Y. et al., Enzymatic Synthesis of Nylon-6 Units in Organic Sol Contained Low-Water: Structural Requirement of 6-Aminohexanoate-Dimer Hydrolase for Efficient Amid Synthesis. To be Published
- Release Date
- 2010-09-01
- Peptides
- 6-AMINOHEXANOATE-DIMER HYDROLASE: AB
- SMTL:PDB
- SMTL Chain Id:
PDB Chain Id:A
AB
A