- Coordinates
- PDB Format
- Method
- X-RAY DIFFRACTION 1.80 Å
- Oligo State
- homo-dimer
- Ligands
- 2 x B4P: BIS(ADENOSINE)-5'-TETRAPHOSPHATE(Non-covalent)
- 2 x LYN: 2,6-DIAMINO-HEXANOIC ACID AMIDE(Non-covalent)
LYN.2: 15 residues within 4Å:- Chain A: G.207, A.208, A.229, E.231, R.253, M.267, E.269, Y.271, N.414, A.415, F.416, E.418, G.463, G.465
- Ligands: B4P.1
8 PLIP interactions:8 interactions with chain A- Hydrophobic interactions: A:F.416
- Hydrogen bonds: A:R.253, A:E.269, A:N.414, A:E.418
- Water bridges: A:G.207, A:A.209, A:E.231
LYN.7: 15 residues within 4Å:- Chain B: G.207, A.208, A.229, E.231, R.253, M.267, E.269, Y.271, N.414, A.415, F.416, E.418, G.463, G.465
- Ligands: B4P.6
9 PLIP interactions:9 interactions with chain B- Hydrophobic interactions: B:F.416
- Hydrogen bonds: B:E.231, B:R.253, B:E.269, B:Y.271, B:N.414, B:E.418
- Water bridges: B:G.207, B:A.209
- 6 x MG: MAGNESIUM ION(Non-covalent)
MG.3: 5 residues within 4Å:- Chain A: E.404, E.411, A.413, N.414
- Ligands: B4P.1
2 PLIP interactions:2 interactions with chain A- Metal complexes: A:E.404, A:E.411
MG.4: 2 residues within 4Å:- Chain A: R.253
- Ligands: B4P.1
No protein-ligand interaction detected (PLIP)MG.5: 3 residues within 4Å:- Chain A: E.404, E.411
- Ligands: B4P.1
4 PLIP interactions:3 interactions with chain A, 1 Ligand-Water interactions- Metal complexes: A:E.404, A:E.411, A:E.411, H2O.9
MG.8: 5 residues within 4Å:- Chain B: E.404, E.411, A.413, N.414
- Ligands: B4P.6
3 PLIP interactions:2 interactions with chain B, 1 Ligand-Water interactions- Metal complexes: B:E.404, B:E.411, H2O.16
MG.9: 2 residues within 4Å:- Chain B: R.253
- Ligands: B4P.6
No protein-ligand interaction detected (PLIP)MG.10: 3 residues within 4Å:- Chain B: E.404, E.411
- Ligands: B4P.6
2 PLIP interactions:2 interactions with chain B- Metal complexes: B:E.404, B:E.411
- Links
- RCSB PDBe PDBe-KB PDBj PDBsum CATH PLIP
- Citation
- Sakurama, H. et al., Crystal Structure of Lysyl-tRNA Synthetase from Bacillus stearothermophilus in Complex with Diadenosine Tetraphosphate (AP4A): Insights into AP4A Synthesis Mechanisms and Implication for Recognition of Discriminator Base of tRNA^Lys. To be Published
- Release Date
- 2010-09-22
- Peptides
- Lysyl-tRNA synthetase: AB
- SMTL:PDB
- SMTL Chain Id:
PDB Chain Id:A
CB
D
- Coordinates
- PDB Format
- Method
- X-RAY DIFFRACTION 1.80 Å
- Oligo State
- homo-dimer
- Ligands
- 2 x B4P: BIS(ADENOSINE)-5'-TETRAPHOSPHATE(Non-covalent)
- 2 x LYN: 2,6-DIAMINO-HEXANOIC ACID AMIDE(Non-covalent)
- 6 x MG: MAGNESIUM ION(Non-covalent)
- Links
- RCSB PDBe PDBe-KB PDBj PDBsum CATH PLIP
- Citation
- Sakurama, H. et al., Crystal Structure of Lysyl-tRNA Synthetase from Bacillus stearothermophilus in Complex with Diadenosine Tetraphosphate (AP4A): Insights into AP4A Synthesis Mechanisms and Implication for Recognition of Discriminator Base of tRNA^Lys. To be Published
- Release Date
- 2010-09-22
- Peptides
- Lysyl-tRNA synthetase: AB
- SMTL:PDB
- SMTL Chain Id:
PDB Chain Id:A
CB
D