SMTL ID : 3aaj.1

Crystal structure of Ca2+-bound form of des3-23ALG-2deltaGF122

Coordinates

PDB Format

Method

X-RAY DIFFRACTION 2.40 Å

Oligo State

homo-dimer

Ligands

6 x CA: CALCIUM ION(Non-covalent)

CA.1: 5 residues within 4Å: Chain A: D.14, D.16, S.18, V.20, E.25 5 PLIP interactions: 5 interactions with chain A Metal complexes: A:D.14, A:D.16, A:S.18, A:V.20, A:E.25 CA.2: 5 residues within 4Å: Chain A: D.81, D.83, S.85, M.87, E.92 5 PLIP interactions: 5 interactions with chain A Metal complexes: A:D.81, A:D.83, A:S.85, A:M.87, A:E.92 CA.3: 4 residues within 4Å: Chain A: D.145, D.147, D.149, W.151 6 PLIP interactions: 4 interactions with chain A, 2 Ligand-Water interactions Metal complexes: A:D.145, A:D.147, A:D.149, A:W.151, H2O.2, H2O.2 CA.4: 6 residues within 4Å: Chain B: D.81, D.83, S.85, M.87, D.89, E.92 5 PLIP interactions: 5 interactions with chain B Metal complexes: B:D.81, B:D.83, B:S.85, B:M.87, B:E.92 CA.5: 5 residues within 4Å: Chain B: D.14, D.16, S.18, V.20, E.25 5 PLIP interactions: 4 interactions with chain B, 1 Ligand-Water interactions Metal complexes: B:D.14, B:D.16, B:V.20, B:E.25, H2O.2 CA.6: 4 residues within 4Å: Chain B: D.145, D.147, D.149, W.151 4 PLIP interactions: 4 interactions with chain B Metal complexes: B:D.145, B:D.147, B:D.149, B:W.151

Links

RCSB   PDBe   PDBe-KB   PDBj   PDBsum   CATH   PLIP

Citation

Inuzuka, T. et al., Molecular basis for defect in Alix-binding by alternatively spliced isoform of ALG-2 (ALG-2DeltaGF122) and structural roles of F122 in target recognition. Bmc Struct.Biol. (2010)

Release Date

2010-09-08

Peptides

Programmed cell death protein 6: AB

SMTL:PDB

SMTL Chain Id:
PDB Chain Id:

A
A

B
B

Programmed cell death protein 6