SMTL ID : 3abg.2 (1 other biounit)

X-ray Crystal Analysis of Bilirubin Oxidase from Myrothecium verrucaria at 2.3 angstrom Resolution using a Twin Crystal

Coordinates

PDB Format

Method

X-RAY DIFFRACTION 2.30 Å

Oligo State

monomer

Ligands

1 x NAG- NAG- BMA- MAN- MAN: alpha-D-mannopyranose-(1-3)-alpha-D-mannopyranose-(1-6)-beta-D-mannopyranose-(1-4)-2-acetamido-2-deoxy-beta-D-glucopyranose-(1-4)-2-acetamido-2-deoxy-beta-D-glucopyranose

NAG-NAG-BMA-MAN-MAN.1: 7 residues within 4Å: Chain A: V.452, N.472, T.474, V.475, A.483, T.484, V.487 2 PLIP interactions: 2 interactions with chain A Hydrophobic interactions: A:V.475, A:A.483

1 x NAG- NAG: 2-acetamido-2-deoxy-beta-D-glucopyranose-(1-4)-2-acetamido-2-deoxy-beta-D-glucopyranose(Post Translational Modification)

NAG-NAG.2: 4 residues within 4Å: Chain A: N.482, E.525, Y.526, R.527 No protein-ligand interaction detected (PLIP)

4 x CU: COPPER (II) ION(Non-covalent)

CU.3: 5 residues within 4Å: Chain A: H.136, H.403, M.454, H.456 Ligands: OXY.7 3 PLIP interactions: 3 interactions with chain A Metal complexes: A:H.136, A:H.403, A:H.456 CU.4: 7 residues within 4Å: Chain A: H.94, H.96, W.132, H.134, H.458 Ligands: CU.5, OXY.7 3 PLIP interactions: 3 interactions with chain A Metal complexes: A:H.96, A:H.134, A:H.458 CU.5: 6 residues within 4Å: Chain A: H.94, H.96, H.401, H.403 Ligands: CU.4, OXY.7 2 PLIP interactions: 2 interactions with chain A Metal complexes: A:H.94, A:H.401 CU.6: 6 residues within 4Å: Chain A: T.397, H.398, C.457, N.459, H.462, M.467 3 PLIP interactions: 3 interactions with chain A Metal complexes: A:H.398, A:C.457, A:H.462

1 x OXY: OXYGEN MOLECULE(Non-covalent)

OXY.7: 11 residues within 4Å: Chain A: H.94, H.96, H.134, H.136, H.401, H.403, H.456, H.458 Ligands: CU.3, CU.4, CU.5 No protein-ligand interaction detected (PLIP)

4 x GOL: GLYCEROL(Non-functional Binders)

GOL.8: 3 residues within 4Å: Chain A: R.294, D.313, K.314 4 PLIP interactions: 4 interactions with chain A Hydrogen bonds: A:R.294, A:R.294, A:D.313, A:K.314 GOL.9: 4 residues within 4Å: Chain A: W.107, V.371, Q.372, R.374 No protein-ligand interaction detected (PLIP) GOL.10: 1 residues within 4Å: Chain A: R.75 1 PLIP interactions: 1 interactions with chain A Hydrogen bonds: A:R.75 GOL.11: 3 residues within 4Å: Chain A: V.1, A.2, I.4 No protein-ligand interaction detected (PLIP)

Links

RCSB   PDBe   PDBe-KB   PDBj   PDBsum   CATH   PLIP

Citation

Mizutani, K. et al., X-ray analysis of bilirubin oxidase from Myrothecium verrucaria at 2.3 A resolution using a twinned crystal. Acta Crystallogr.,Sect.F (2010)

Release Date

2010-08-18

Peptides

Bilirubin oxidase: A

SMTL:PDB

SMTL Chain Id:
PDB Chain Id:

A
B

Bilirubin oxidase

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